miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 183470 0.73 0.533719
Target:  5'- aGCGCGCcUCGGCCucgggagacGCG-CGCAgccccAGCGCg -3'
miRNA:   3'- -UGCGCGcAGCCGG---------CGCaGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 105960 0.73 0.543105
Target:  5'- aGCGCaGCGUCGgcgaGCCGCGcaCGCccGCGCg -3'
miRNA:   3'- -UGCG-CGCAGC----CGGCGCa-GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 225525 0.72 0.562034
Target:  5'- gGCGgGCGaaUCGGCCGgcugGUCGUcgGCGCu -3'
miRNA:   3'- -UGCgCGC--AGCCGGCg---CAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75989 0.72 0.562034
Target:  5'- -aGCGgGUCGGCCaGC-UCGCAGagcuccugguacGCGCg -3'
miRNA:   3'- ugCGCgCAGCCGG-CGcAGCGUU------------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 2483 0.72 0.571566
Target:  5'- cCGCGCGcCGcGCUGUGggcgCGCGAGcCGCa -3'
miRNA:   3'- uGCGCGCaGC-CGGCGCa---GCGUUU-GCG- -5'
1564 3' -58.8 NC_001347.2 + 17025 0.72 0.590739
Target:  5'- gGCGCGCGU-GGuCCGCGgcgacuUCGCgGAACGUc -3'
miRNA:   3'- -UGCGCGCAgCC-GGCGC------AGCG-UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 183244 0.72 0.590739
Target:  5'- aGCGCGUGUCGcaGCUGCaaguGUCGCA-GCGUc -3'
miRNA:   3'- -UGCGCGCAGC--CGGCG----CAGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 169128 0.72 0.600369
Target:  5'- cCGCGCG-C-GCCGCGcUGCAGugGCu -3'
miRNA:   3'- uGCGCGCaGcCGGCGCaGCGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 154809 0.72 0.600369
Target:  5'- aGCGCGUGUCgauGGCCaGCGgcgCGCAcaguCGCc -3'
miRNA:   3'- -UGCGCGCAG---CCGG-CGCa--GCGUuu--GCG- -5'
1564 3' -58.8 NC_001347.2 + 150918 0.71 0.619687
Target:  5'- uCGCaGCGgCGuGCCGUG-CGCGAAUGCa -3'
miRNA:   3'- uGCG-CGCaGC-CGGCGCaGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 173973 0.71 0.629361
Target:  5'- -aGCGCG--GGCCGCGUgccUGgGAACGCg -3'
miRNA:   3'- ugCGCGCagCCGGCGCA---GCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1820 0.71 0.636135
Target:  5'- gGCGCaguacgagccguucGCGUCGGCgccgcacccCGCGUCGCugcuGACGg -3'
miRNA:   3'- -UGCG--------------CGCAGCCG---------GCGCAGCGu---UUGCg -5'
1564 3' -58.8 NC_001347.2 + 166123 0.71 0.63807
Target:  5'- -gGCGCGauccgcuUCGGCCGcCGcCGCA-ACGCc -3'
miRNA:   3'- ugCGCGC-------AGCCGGC-GCaGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 192241 0.71 0.639037
Target:  5'- aAC-CGCGUCGGCCuCGcCGgccCGAGCGCg -3'
miRNA:   3'- -UGcGCGCAGCCGGcGCaGC---GUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 152044 0.71 0.639037
Target:  5'- gGCGCGgaaaccacCGUCGGCCGUGU-GCAAcuACGa -3'
miRNA:   3'- -UGCGC--------GCAGCCGGCGCAgCGUU--UGCg -5'
1564 3' -58.8 NC_001347.2 + 16398 0.71 0.647742
Target:  5'- cCGaCGCGUUGGCCGCcugCGUuggcgaacaccacGGACGCg -3'
miRNA:   3'- uGC-GCGCAGCCGGCGca-GCG-------------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 98003 0.71 0.648709
Target:  5'- aACGcCGCGUCGuGCCaacccgGCGUCG--GACGCu -3'
miRNA:   3'- -UGC-GCGCAGC-CGG------CGCAGCguUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 90221 0.71 0.648709
Target:  5'- gACG-GCGU-GGCgGCGUCGUuuuucgGAGCGCg -3'
miRNA:   3'- -UGCgCGCAgCCGgCGCAGCG------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 110521 0.71 0.658368
Target:  5'- gGCGCgGCGgcgaagaaaaUCGGCCGCGaaUGgAAGCGCg -3'
miRNA:   3'- -UGCG-CGC----------AGCCGGCGCa-GCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 99999 0.71 0.668009
Target:  5'- cGCGgGCG-CGGUCGCGaUGCAGcugagccaguACGCg -3'
miRNA:   3'- -UGCgCGCaGCCGGCGCaGCGUU----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.