miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 209067 0.66 0.887522
Target:  5'- uCGCGCacCGGCUGCagacaggGCGAACGCa -3'
miRNA:   3'- uGCGCGcaGCCGGCGcag----CGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 210424 0.66 0.887522
Target:  5'- gACG-GCGgucucaaCGGCCGCGgggaacgcacaUCGUAGACGg -3'
miRNA:   3'- -UGCgCGCa------GCCGGCGC-----------AGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 68698 0.66 0.887522
Target:  5'- cAUGaCGCGgCGG-CGCaaagCGCGAGCGCa -3'
miRNA:   3'- -UGC-GCGCaGCCgGCGca--GCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 41157 0.66 0.887522
Target:  5'- cCGCGCGgaaaUCcGCCGCG--GCGGugGCg -3'
miRNA:   3'- uGCGCGC----AGcCGGCGCagCGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 51253 0.66 0.883608
Target:  5'- cCGgGCGUUGGCCuguggauagauuucuGCGUguacCGCuacAACGCg -3'
miRNA:   3'- uGCgCGCAGCCGG---------------CGCA----GCGu--UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 113830 0.66 0.880958
Target:  5'- aACGUGUccuacaaCGGCCGUGUCGUcGugGUu -3'
miRNA:   3'- -UGCGCGca-----GCCGGCGCAGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 196899 0.66 0.880958
Target:  5'- -aGCGUGUC-GCUGCGcaucaagCGCGAGCuGCu -3'
miRNA:   3'- ugCGCGCAGcCGGCGCa------GCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 183133 0.66 0.880958
Target:  5'- aGCGUGacgaaaGUCuGCCGCGUCuCGGGgGCu -3'
miRNA:   3'- -UGCGCg-----CAGcCGGCGCAGcGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 166283 0.67 0.874195
Target:  5'- aGCGCGCGUUGcaCCGCGguaaCGacGGCGCc -3'
miRNA:   3'- -UGCGCGCAGCc-GGCGCa---GCguUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 109458 0.67 0.867239
Target:  5'- gACGCcccGCGUcacCGGCgGCGgCGCcAugGCg -3'
miRNA:   3'- -UGCG---CGCA---GCCGgCGCaGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 138701 0.67 0.867239
Target:  5'- -gGUGCGUCGGCUaGCGgucuggUGCGAGagGCu -3'
miRNA:   3'- ugCGCGCAGCCGG-CGCa-----GCGUUUg-CG- -5'
1564 3' -58.8 NC_001347.2 + 150574 0.67 0.867239
Target:  5'- gGCGUuuucaGCGUCGGCUcCGgcaGUAGugGCg -3'
miRNA:   3'- -UGCG-----CGCAGCCGGcGCag-CGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 193830 0.67 0.867239
Target:  5'- gGCGCGCGaucuggggcucUCGGCCuCGaUGCu-GCGCc -3'
miRNA:   3'- -UGCGCGC-----------AGCCGGcGCaGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 85497 0.67 0.867239
Target:  5'- cGCGCaGCGguucgggCGGCUugaGCGggCGCGcGCGCu -3'
miRNA:   3'- -UGCG-CGCa------GCCGG---CGCa-GCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75404 0.67 0.867239
Target:  5'- aGCGggaGCGgCGGCCGUGgcggCgGCAGcgGCGCa -3'
miRNA:   3'- -UGCg--CGCaGCCGGCGCa---G-CGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 94337 0.67 0.862975
Target:  5'- -gGCGuCGUCggaGGCCgguGCGUCGUccucaucuccgccugGAGCGCg -3'
miRNA:   3'- ugCGC-GCAG---CCGG---CGCAGCG---------------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 17130 0.67 0.860094
Target:  5'- cCGC-CGUCGGCCGC--CGCccAUGCc -3'
miRNA:   3'- uGCGcGCAGCCGGCGcaGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 98048 0.67 0.860094
Target:  5'- aACGcCGCGgcggcagCGGCCGCGgcuuccaucaUCGUGAugcaaaccGCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGGCGC----------AGCGUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 200448 0.67 0.852765
Target:  5'- gACGCGCcuggccuucGUgGGUCGCuUCGUGAACGa -3'
miRNA:   3'- -UGCGCG---------CAgCCGGCGcAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 113196 0.67 0.852765
Target:  5'- -gGCGUGgCGGCCugacugcgGCuGUCGCccGAACGCu -3'
miRNA:   3'- ugCGCGCaGCCGG--------CG-CAGCG--UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.