miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 200448 0.67 0.852765
Target:  5'- gACGCGCcuggccuucGUgGGUCGCuUCGUGAACGa -3'
miRNA:   3'- -UGCGCG---------CAgCCGGCGcAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 196553 0.67 0.852765
Target:  5'- cCGCGgGcUgGGCCugugccaacccGCGUCGCGGcuACGCc -3'
miRNA:   3'- uGCGCgC-AgCCGG-----------CGCAGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 18956 0.67 0.847528
Target:  5'- gGCGCGCGcaagacaaccagaacUgGGCCuuccccucucacaGCGUCG-AAACGCu -3'
miRNA:   3'- -UGCGCGC---------------AgCCGG-------------CGCAGCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 36780 0.67 0.845257
Target:  5'- cACGCGCuacGUa-GCCG-GUCGCGGACcGCg -3'
miRNA:   3'- -UGCGCG---CAgcCGGCgCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 79060 0.67 0.845257
Target:  5'- -gGCGCGUCGgcgccaaaugaGCCGCGaagCGgCGGGCGg -3'
miRNA:   3'- ugCGCGCAGC-----------CGGCGCa--GC-GUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 158983 0.67 0.845257
Target:  5'- uUGCGCaugGUa-GCCGUGUCGCGcacccGGCGCu -3'
miRNA:   3'- uGCGCG---CAgcCGGCGCAGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 190839 0.67 0.845257
Target:  5'- aGCGCGCGgcauguugCGcGCCGUGaucUUGUccgAGACGCg -3'
miRNA:   3'- -UGCGCGCa-------GC-CGGCGC---AGCG---UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1207 0.67 0.838352
Target:  5'- gGCGCGCGgcguUUuuggccaacagcacgGGCCGCGccaugcgcaaguggUCGCAgcgcGACGCg -3'
miRNA:   3'- -UGCGCGC----AG---------------CCGGCGC--------------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 226759 0.67 0.837577
Target:  5'- uCG-GCGUCGgcauGCCGCugaUCGCAGugGCc -3'
miRNA:   3'- uGCgCGCAGC----CGGCGc--AGCGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 170134 0.68 0.829729
Target:  5'- gACGCGUGacagCGGucCCGCcgugcccaGUCGCGgugGACGCg -3'
miRNA:   3'- -UGCGCGCa---GCC--GGCG--------CAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 187350 0.68 0.821721
Target:  5'- uGCGuUGCGU-GGCCGUGgCGCGu-CGCg -3'
miRNA:   3'- -UGC-GCGCAgCCGGCGCaGCGUuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 81592 0.68 0.821721
Target:  5'- uCGC-CGcCGGCCG-GUCGCu--CGCg -3'
miRNA:   3'- uGCGcGCaGCCGGCgCAGCGuuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 128850 0.68 0.821721
Target:  5'- aGCGCGaaCGcCGcGCC-CGUCGCGcacGGCGCu -3'
miRNA:   3'- -UGCGC--GCaGC-CGGcGCAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 228705 0.68 0.821721
Target:  5'- uUGCGCuGUCGGCC-CaGUCGCcacCGCc -3'
miRNA:   3'- uGCGCG-CAGCCGGcG-CAGCGuuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 84391 0.68 0.821721
Target:  5'- -gGUGUGUCgGGCCGCG--GCAGuCGCu -3'
miRNA:   3'- ugCGCGCAG-CCGGCGCagCGUUuGCG- -5'
1564 3' -58.8 NC_001347.2 + 137464 0.68 0.821721
Target:  5'- cGCGCGCGUgCGuGCgCGCG-CGUG-ACGUa -3'
miRNA:   3'- -UGCGCGCA-GC-CG-GCGCaGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 198388 0.68 0.821721
Target:  5'- gGCGCGCG--GGUCGCGcaacaGCGGAuCGCg -3'
miRNA:   3'- -UGCGCGCagCCGGCGCag---CGUUU-GCG- -5'
1564 3' -58.8 NC_001347.2 + 183184 0.68 0.813558
Target:  5'- -aGCGCGUCGcaaaGCCG-GUUGCA-GCGUu -3'
miRNA:   3'- ugCGCGCAGC----CGGCgCAGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 126492 0.68 0.813558
Target:  5'- aGCGCGUGUCcgcuuucguGGCguaCGcCGUCGC--GCGCa -3'
miRNA:   3'- -UGCGCGCAG---------CCG---GC-GCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 155253 0.68 0.813558
Target:  5'- aACGCGaaaCGGCCuGuCGUUGCGGACuGCa -3'
miRNA:   3'- -UGCGCgcaGCCGG-C-GCAGCGUUUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.