miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 126654 0.68 0.813558
Target:  5'- cACGCGCG-CGGuuGC-UCGaguaccGGCGCg -3'
miRNA:   3'- -UGCGCGCaGCCggCGcAGCgu----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1308 0.68 0.806086
Target:  5'- uACGCGCGggugacGCCGCGcagccagaugaacggCGUggGCGCg -3'
miRNA:   3'- -UGCGCGCagc---CGGCGCa--------------GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 77516 0.68 0.805248
Target:  5'- -gGCGCGU-GGCCGaggaguggaaGUUGCAcgcGGCGCu -3'
miRNA:   3'- ugCGCGCAgCCGGCg---------CAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 89037 0.68 0.805248
Target:  5'- uUGCaGCuGUCGGgCGCGUUGCAAcucuUGCu -3'
miRNA:   3'- uGCG-CG-CAGCCgGCGCAGCGUUu---GCG- -5'
1564 3' -58.8 NC_001347.2 + 78661 0.68 0.796799
Target:  5'- uGCcCGUGUUggaGGCCGUG-CGCAAgGCGCg -3'
miRNA:   3'- -UGcGCGCAG---CCGGCGCaGCGUU-UGCG- -5'
1564 3' -58.8 NC_001347.2 + 37036 0.68 0.796799
Target:  5'- gGCGUGUGuuugacauuuuuUCGGCCGCGgaggUGCuGGCGg -3'
miRNA:   3'- -UGCGCGC------------AGCCGGCGCa---GCGuUUGCg -5'
1564 3' -58.8 NC_001347.2 + 100127 0.68 0.796799
Target:  5'- aACGCGCa-CGG-CGC-UUGCGGACGCa -3'
miRNA:   3'- -UGCGCGcaGCCgGCGcAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 93647 0.68 0.788216
Target:  5'- uACGCGCGaccucgucgCGGUCGUGcggaUCGguGGCGUa -3'
miRNA:   3'- -UGCGCGCa--------GCCGGCGC----AGCguUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 208076 0.68 0.788216
Target:  5'- uGC-CGCGUCGGguaCCGCuGcCGCAGauggGCGCa -3'
miRNA:   3'- -UGcGCGCAGCC---GGCG-CaGCGUU----UGCG- -5'
1564 3' -58.8 NC_001347.2 + 183675 0.69 0.779507
Target:  5'- -aGCaCGUCGaGCUGCGUgCGCAGGuccCGCa -3'
miRNA:   3'- ugCGcGCAGC-CGGCGCA-GCGUUU---GCG- -5'
1564 3' -58.8 NC_001347.2 + 37924 0.69 0.779507
Target:  5'- gGCGCccacaGCG-CGGCgCGCGggUGCAggUGCa -3'
miRNA:   3'- -UGCG-----CGCaGCCG-GCGCa-GCGUuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 17989 0.69 0.779507
Target:  5'- gAUGCGCGaacaGGCCGCcauccCGCAGauuuACGCa -3'
miRNA:   3'- -UGCGCGCag--CCGGCGca---GCGUU----UGCG- -5'
1564 3' -58.8 NC_001347.2 + 2215 0.69 0.761744
Target:  5'- -gGCGgGUcCGGCgGCGUCGgGGaccgugccGCGCg -3'
miRNA:   3'- ugCGCgCA-GCCGgCGCAGCgUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 129201 0.69 0.761744
Target:  5'- aGCGaCGCGU-GGCCGCGUcCGCcu-CGg -3'
miRNA:   3'- -UGC-GCGCAgCCGGCGCA-GCGuuuGCg -5'
1564 3' -58.8 NC_001347.2 + 182206 0.69 0.752704
Target:  5'- uGCGgGUGgcgGGCUGCGUCGCcuucgguGACGUc -3'
miRNA:   3'- -UGCgCGCag-CCGGCGCAGCGu------UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 2141 0.69 0.752704
Target:  5'- gACGCGCacgCGGUgGuCGggGCGGACGCg -3'
miRNA:   3'- -UGCGCGca-GCCGgC-GCagCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 99530 0.69 0.74357
Target:  5'- aACGCGaucugCGGCCGgGUCGCGcg-GCa -3'
miRNA:   3'- -UGCGCgca--GCCGGCgCAGCGUuugCG- -5'
1564 3' -58.8 NC_001347.2 + 15358 0.69 0.74357
Target:  5'- gACGcCGCGUUGcCCgaugaGCGaCGCGAGCGCg -3'
miRNA:   3'- -UGC-GCGCAGCcGG-----CGCaGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 86265 0.69 0.735274
Target:  5'- gGCGCGCGaagcuUCGGCgGCGUgcCGCugacccaaaaugucGCGCa -3'
miRNA:   3'- -UGCGCGC-----AGCCGgCGCA--GCGuu------------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 1873 0.69 0.733422
Target:  5'- cCGUGCGUCGGCaccugaaccaGCGUCugugcugcggcugGCuGGCGCu -3'
miRNA:   3'- uGCGCGCAGCCGg---------CGCAG-------------CGuUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.