miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 69 0.73 0.524391
Target:  5'- gUGUGUGcCGGgUGUGUCGCGGGCGUg -3'
miRNA:   3'- uGCGCGCaGCCgGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 125 0.73 0.533719
Target:  5'- -gGUGUGUCaGGgUGUGUCGCGGGCGUg -3'
miRNA:   3'- ugCGCGCAG-CCgGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 157 0.74 0.469883
Target:  5'- -gGUGUGUCGuGCCggguGUGUCGCGGGCGUg -3'
miRNA:   3'- ugCGCGCAGC-CGG----CGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 219 0.66 0.905995
Target:  5'- -gGUGUGUCGGCgGUGUgCGCGGccuCGg -3'
miRNA:   3'- ugCGCGCAGCCGgCGCA-GCGUUu--GCg -5'
1564 3' -58.8 NC_001347.2 + 802 0.7 0.706238
Target:  5'- cCGCGUGUCuaaaCCGCGugcUCGCuGACGCg -3'
miRNA:   3'- uGCGCGCAGcc--GGCGC---AGCGuUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1207 0.67 0.838352
Target:  5'- gGCGCGCGgcguUUuuggccaacagcacgGGCCGCGccaugcgcaaguggUCGCAgcgcGACGCg -3'
miRNA:   3'- -UGCGCGC----AG---------------CCGGCGC--------------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1308 0.68 0.806086
Target:  5'- uACGCGCGggugacGCCGCGcagccagaugaacggCGUggGCGCg -3'
miRNA:   3'- -UGCGCGCagc---CGGCGCa--------------GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1820 0.71 0.636135
Target:  5'- gGCGCaguacgagccguucGCGUCGGCgccgcacccCGCGUCGCugcuGACGg -3'
miRNA:   3'- -UGCG--------------CGCAGCCG---------GCGCAGCGu---UUGCg -5'
1564 3' -58.8 NC_001347.2 + 1873 0.69 0.733422
Target:  5'- cCGUGCGUCGGCaccugaaccaGCGUCugugcugcggcugGCuGGCGCu -3'
miRNA:   3'- uGCGCGCAGCCGg---------CGCAG-------------CGuUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 2141 0.69 0.752704
Target:  5'- gACGCGCacgCGGUgGuCGggGCGGACGCg -3'
miRNA:   3'- -UGCGCGca-GCCGgC-GCagCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 2215 0.69 0.761744
Target:  5'- -gGCGgGUcCGGCgGCGUCGgGGaccgugccGCGCg -3'
miRNA:   3'- ugCGCgCA-GCCGgCGCAGCgUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 2349 0.7 0.715675
Target:  5'- uGCGCGCGggCGuGCUGgGcgCGCuGGCGCu -3'
miRNA:   3'- -UGCGCGCa-GC-CGGCgCa-GCGuUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 2483 0.72 0.571566
Target:  5'- cCGCGCGcCGcGCUGUGggcgCGCGAGcCGCa -3'
miRNA:   3'- uGCGCGCaGC-CGGCGCa---GCGUUU-GCG- -5'
1564 3' -58.8 NC_001347.2 + 15358 0.69 0.74357
Target:  5'- gACGcCGCGUUGcCCgaugaGCGaCGCGAGCGCg -3'
miRNA:   3'- -UGC-GCGCAGCcGG-----CGCaGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 15618 0.66 0.905995
Target:  5'- gACGaCGCGUUcGUCGaCG-CGCGAggGCGCg -3'
miRNA:   3'- -UGC-GCGCAGcCGGC-GCaGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 16398 0.71 0.647742
Target:  5'- cCGaCGCGUUGGCCGCcugCGUuggcgaacaccacGGACGCg -3'
miRNA:   3'- uGC-GCGCAGCCGGCGca-GCG-------------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 17025 0.72 0.590739
Target:  5'- gGCGCGCGU-GGuCCGCGgcgacuUCGCgGAACGUc -3'
miRNA:   3'- -UGCGCGCAgCC-GGCGC------AGCG-UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 17130 0.67 0.860094
Target:  5'- cCGC-CGUCGGCCGC--CGCccAUGCc -3'
miRNA:   3'- uGCGcGCAGCCGGCGcaGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 17989 0.69 0.779507
Target:  5'- gAUGCGCGaacaGGCCGCcauccCGCAGauuuACGCa -3'
miRNA:   3'- -UGCGCGCag--CCGGCGca---GCGUU----UGCG- -5'
1564 3' -58.8 NC_001347.2 + 18956 0.67 0.847528
Target:  5'- gGCGCGCGcaagacaaccagaacUgGGCCuuccccucucacaGCGUCG-AAACGCu -3'
miRNA:   3'- -UGCGCGC---------------AgCCGG-------------CGCAGCgUUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.