miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 31668 0.7 0.695794
Target:  5'- gGCuCGgGUCGGCUGgucgggcCGUCGCGGACGa -3'
miRNA:   3'- -UGcGCgCAGCCGGC-------GCAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 36780 0.67 0.845257
Target:  5'- cACGCGCuacGUa-GCCG-GUCGCGGACcGCg -3'
miRNA:   3'- -UGCGCG---CAgcCGGCgCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 37036 0.68 0.796799
Target:  5'- gGCGUGUGuuugacauuuuuUCGGCCGCGgaggUGCuGGCGg -3'
miRNA:   3'- -UGCGCGC------------AGCCGGCGCa---GCGuUUGCg -5'
1564 3' -58.8 NC_001347.2 + 37924 0.69 0.779507
Target:  5'- gGCGCccacaGCG-CGGCgCGCGggUGCAggUGCa -3'
miRNA:   3'- -UGCG-----CGCaGCCG-GCGCa-GCGUuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 38013 0.7 0.687205
Target:  5'- cCGCGCGgccUCGGCgGCGggcgccgacUCGCGucccAGCGCc -3'
miRNA:   3'- uGCGCGC---AGCCGgCGC---------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 38277 0.7 0.715675
Target:  5'- cGCGUGCG-CGuCCGCGUuaggcaCGCAAAuCGCg -3'
miRNA:   3'- -UGCGCGCaGCcGGCGCA------GCGUUU-GCG- -5'
1564 3' -58.8 NC_001347.2 + 38752 0.66 0.887522
Target:  5'- aGCGC-CGgcugaGGCagcaGCGUCGC--GCGCg -3'
miRNA:   3'- -UGCGcGCag---CCGg---CGCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 39154 0.7 0.696746
Target:  5'- uGCcCGCGUCGcGCUGCGaccacuugCGCAuGGCGCg -3'
miRNA:   3'- -UGcGCGCAGC-CGGCGCa-------GCGU-UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 41157 0.66 0.887522
Target:  5'- cCGCGCGgaaaUCcGCCGCG--GCGGugGCg -3'
miRNA:   3'- uGCGCGC----AGcCGGCGCagCGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 51253 0.66 0.883608
Target:  5'- cCGgGCGUUGGCCuguggauagauuucuGCGUguacCGCuacAACGCg -3'
miRNA:   3'- uGCgCGCAGCCGG---------------CGCA----GCGu--UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 66504 0.66 0.905995
Target:  5'- aACGcCGCGaucgaggCGGCgGCGaUCGCAGccuccuCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGgCGC-AGCGUUu-----GCG- -5'
1564 3' -58.8 NC_001347.2 + 68698 0.66 0.887522
Target:  5'- cAUGaCGCGgCGG-CGCaaagCGCGAGCGCa -3'
miRNA:   3'- -UGC-GCGCaGCCgGCGca--GCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75404 0.67 0.867239
Target:  5'- aGCGggaGCGgCGGCCGUGgcggCgGCAGcgGCGCa -3'
miRNA:   3'- -UGCg--CGCaGCCGGCGCa---G-CGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 75853 0.77 0.333573
Target:  5'- aACGa-CGUCGGCCGCGgggCGCA-GCGCc -3'
miRNA:   3'- -UGCgcGCAGCCGGCGCa--GCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75989 0.72 0.562034
Target:  5'- -aGCGgGUCGGCCaGC-UCGCAGagcuccugguacGCGCg -3'
miRNA:   3'- ugCGCgCAGCCGG-CGcAGCGUU------------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 76621 0.67 0.852765
Target:  5'- gGCG-GCGgcugCGGCCGCG--GCGGAgGCc -3'
miRNA:   3'- -UGCgCGCa---GCCGGCGCagCGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 77311 0.7 0.687205
Target:  5'- uUGgGCGUgGGCCGCGgCGUGGAUGa -3'
miRNA:   3'- uGCgCGCAgCCGGCGCaGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 77516 0.68 0.805248
Target:  5'- -gGCGCGU-GGCCGaggaguggaaGUUGCAcgcGGCGCu -3'
miRNA:   3'- ugCGCGCAgCCGGCg---------CAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 78661 0.68 0.796799
Target:  5'- uGCcCGUGUUggaGGCCGUG-CGCAAgGCGCg -3'
miRNA:   3'- -UGcGCGCAG---CCGGCGCaGCGUU-UGCG- -5'
1564 3' -58.8 NC_001347.2 + 79060 0.67 0.845257
Target:  5'- -gGCGCGUCGgcgccaaaugaGCCGCGaagCGgCGGGCGg -3'
miRNA:   3'- ugCGCGCAGC-----------CGGCGCa--GC-GUUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.