miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 98048 0.67 0.860094
Target:  5'- aACGcCGCGgcggcagCGGCCGCGgcuuccaucaUCGUGAugcaaaccGCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGGCGC----------AGCGUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 99530 0.69 0.74357
Target:  5'- aACGCGaucugCGGCCGgGUCGCGcg-GCa -3'
miRNA:   3'- -UGCGCgca--GCCGGCgCAGCGUuugCG- -5'
1564 3' -58.8 NC_001347.2 + 99999 0.71 0.668009
Target:  5'- cGCGgGCG-CGGUCGCGaUGCAGcugagccaguACGCg -3'
miRNA:   3'- -UGCgCGCaGCCGGCGCaGCGUU----------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 100127 0.68 0.796799
Target:  5'- aACGCGCa-CGG-CGC-UUGCGGACGCa -3'
miRNA:   3'- -UGCGCGcaGCCgGCGcAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 101442 0.66 0.893886
Target:  5'- uGCGCGCGcuuaaaaacaCGGCCGa--CGCcaugGAGCGCg -3'
miRNA:   3'- -UGCGCGCa---------GCCGGCgcaGCG----UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 103701 0.66 0.905995
Target:  5'- cACGUGCuuuacaaCGGCUgcuGCGUCGUGAcgGCGCc -3'
miRNA:   3'- -UGCGCGca-----GCCGG---CGCAGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 105960 0.73 0.543105
Target:  5'- aGCGCaGCGUCGgcgaGCCGCGcaCGCccGCGCg -3'
miRNA:   3'- -UGCG-CGCAGC----CGGCGCa-GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 109458 0.67 0.867239
Target:  5'- gACGCcccGCGUcacCGGCgGCGgCGCcAugGCg -3'
miRNA:   3'- -UGCG---CGCA---GCCGgCGCaGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 110521 0.71 0.658368
Target:  5'- gGCGCgGCGgcgaagaaaaUCGGCCGCGaaUGgAAGCGCg -3'
miRNA:   3'- -UGCG-CGC----------AGCCGGCGCa-GCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 113196 0.67 0.852765
Target:  5'- -gGCGUGgCGGCCugacugcgGCuGUCGCccGAACGCu -3'
miRNA:   3'- ugCGCGCaGCCGG--------CG-CAGCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 113830 0.66 0.880958
Target:  5'- aACGUGUccuacaaCGGCCGUGUCGUcGugGUu -3'
miRNA:   3'- -UGCGCGca-----GCCGGCGCAGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 118202 0.66 0.900044
Target:  5'- cCGCGCauuGUCaccGCCGCGUCcuccaGCAAcCGCc -3'
miRNA:   3'- uGCGCG---CAGc--CGGCGCAG-----CGUUuGCG- -5'
1564 3' -58.8 NC_001347.2 + 126492 0.68 0.813558
Target:  5'- aGCGCGUGUCcgcuuucguGGCguaCGcCGUCGC--GCGCa -3'
miRNA:   3'- -UGCGCGCAG---------CCG---GC-GCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 126654 0.68 0.813558
Target:  5'- cACGCGCG-CGGuuGC-UCGaguaccGGCGCg -3'
miRNA:   3'- -UGCGCGCaGCCggCGcAGCgu----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 128850 0.68 0.821721
Target:  5'- aGCGCGaaCGcCGcGCC-CGUCGCGcacGGCGCu -3'
miRNA:   3'- -UGCGC--GCaGC-CGGcGCAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 129201 0.69 0.761744
Target:  5'- aGCGaCGCGU-GGCCGCGUcCGCcu-CGg -3'
miRNA:   3'- -UGC-GCGCAgCCGGCGCA-GCGuuuGCg -5'
1564 3' -58.8 NC_001347.2 + 130129 0.73 0.515126
Target:  5'- uCGCGCGU-GGCCGUcUCGCu-ACGCc -3'
miRNA:   3'- uGCGCGCAgCCGGCGcAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 137464 0.68 0.821721
Target:  5'- cGCGCGCGUgCGuGCgCGCG-CGUG-ACGUa -3'
miRNA:   3'- -UGCGCGCA-GC-CG-GCGCaGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 138701 0.67 0.867239
Target:  5'- -gGUGCGUCGGCUaGCGgucuggUGCGAGagGCu -3'
miRNA:   3'- ugCGCGCAGCCGG-CGCa-----GCGUUUg-CG- -5'
1564 3' -58.8 NC_001347.2 + 139240 0.7 0.687205
Target:  5'- gACGUGCaUCGGCUGUG-CGaGGACGCc -3'
miRNA:   3'- -UGCGCGcAGCCGGCGCaGCgUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.