miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 142261 0.73 0.505928
Target:  5'- uGCGagGCGcUGGCCGCGUCGCuGAUGg -3'
miRNA:   3'- -UGCg-CGCaGCCGGCGCAGCGuUUGCg -5'
1564 3' -58.8 NC_001347.2 + 148624 0.7 0.715675
Target:  5'- uCGCGgGU-GGCCgGCGUCaGCGuuCGCa -3'
miRNA:   3'- uGCGCgCAgCCGG-CGCAG-CGUuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 150574 0.67 0.867239
Target:  5'- gGCGUuuucaGCGUCGGCUcCGgcaGUAGugGCg -3'
miRNA:   3'- -UGCG-----CGCAGCCGGcGCag-CGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 150918 0.71 0.619687
Target:  5'- uCGCaGCGgCGuGCCGUG-CGCGAAUGCa -3'
miRNA:   3'- uGCG-CGCaGC-CGGCGCaGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 151085 0.75 0.44373
Target:  5'- cACGCGCaUCGGUCGCGacaUGCuaGAGCGCa -3'
miRNA:   3'- -UGCGCGcAGCCGGCGCa--GCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 152044 0.71 0.639037
Target:  5'- gGCGCGgaaaccacCGUCGGCCGUGU-GCAAcuACGa -3'
miRNA:   3'- -UGCGC--------GCAGCCGGCGCAgCGUU--UGCg -5'
1564 3' -58.8 NC_001347.2 + 153241 0.79 0.256194
Target:  5'- gGCGCGCGUCGGCCGgCGacggcgguUCGCcGugGUu -3'
miRNA:   3'- -UGCGCGCAGCCGGC-GC--------AGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 153324 0.7 0.696746
Target:  5'- aGCuCGCGUUGGCgGCGcUUGCGgagcagggAGCGCa -3'
miRNA:   3'- -UGcGCGCAGCCGgCGC-AGCGU--------UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 154809 0.72 0.600369
Target:  5'- aGCGCGUGUCgauGGCCaGCGgcgCGCAcaguCGCc -3'
miRNA:   3'- -UGCGCGCAG---CCGG-CGCa--GCGUuu--GCG- -5'
1564 3' -58.8 NC_001347.2 + 155253 0.68 0.813558
Target:  5'- aACGCGaaaCGGCCuGuCGUUGCGGACuGCa -3'
miRNA:   3'- -UGCGCgcaGCCGG-C-GCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 156522 0.81 0.189623
Target:  5'- gGCGCGCccgcauGUCGGCCGCGcuuaCGCGAACGg -3'
miRNA:   3'- -UGCGCG------CAGCCGGCGCa---GCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 156682 0.66 0.900044
Target:  5'- gGCGgGuCGUggCGGCUGUGUCGUuguGAgGCc -3'
miRNA:   3'- -UGCgC-GCA--GCCGGCGCAGCGu--UUgCG- -5'
1564 3' -58.8 NC_001347.2 + 156836 0.69 0.733422
Target:  5'- cCGCGCGUCGGCCucuggaggagcacGUgaGUCGUcgGCGa -3'
miRNA:   3'- uGCGCGCAGCCGG-------------CG--CAGCGuuUGCg -5'
1564 3' -58.8 NC_001347.2 + 158983 0.67 0.845257
Target:  5'- uUGCGCaugGUa-GCCGUGUCGCGcacccGGCGCu -3'
miRNA:   3'- uGCGCG---CAgcCGGCGCAGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 159482 0.66 0.887522
Target:  5'- -gGCGCGgCGGCUGCugaacucgCGCGAugGg -3'
miRNA:   3'- ugCGCGCaGCCGGCGca------GCGUUugCg -5'
1564 3' -58.8 NC_001347.2 + 161807 0.66 0.893886
Target:  5'- -gGUGCGUagGGuCCGCGgugauuugCGCAAGgGCu -3'
miRNA:   3'- ugCGCGCAg-CC-GGCGCa-------GCGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 163957 0.7 0.687205
Target:  5'- cACGCGCGUCagcaGCUGCGUgCuCAGACGg -3'
miRNA:   3'- -UGCGCGCAGc---CGGCGCA-GcGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 165661 0.7 0.687205
Target:  5'- uCGCGC-UCaGCCGCG-CGUccAGACGCg -3'
miRNA:   3'- uGCGCGcAGcCGGCGCaGCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 166123 0.71 0.63807
Target:  5'- -gGCGCGauccgcuUCGGCCGcCGcCGCA-ACGCc -3'
miRNA:   3'- ugCGCGC-------AGCCGGC-GCaGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 166283 0.67 0.874195
Target:  5'- aGCGCGCGUUGcaCCGCGguaaCGacGGCGCc -3'
miRNA:   3'- -UGCGCGCAGCc-GGCGCa---GCguUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.