miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 5' -58.7 NC_001347.2 + 81200 0.66 0.866796
Target:  5'- -gGC-CGCGCGACagaacccacaaaaGGCCGGCCg-- -3'
miRNA:   3'- aaCGuGCGCGCUGaa-----------CCGGCUGGaca -5'
1564 5' -58.7 NC_001347.2 + 157017 0.66 0.863882
Target:  5'- -cGCGCGCuuuGCGACUcugGGCCcgcugGugCUGg -3'
miRNA:   3'- aaCGUGCG---CGCUGAa--CCGG-----CugGACa -5'
1564 5' -58.7 NC_001347.2 + 158427 0.66 0.863882
Target:  5'- -cGUACGCGUgGGCUggaaaGCCGugCUGg -3'
miRNA:   3'- aaCGUGCGCG-CUGAac---CGGCugGACa -5'
1564 5' -58.7 NC_001347.2 + 158176 0.66 0.856457
Target:  5'- cUGgACGCGCGcucGCUggUGGCCGuggUCUGUc -3'
miRNA:   3'- aACgUGCGCGC---UGA--ACCGGCu--GGACA- -5'
1564 5' -58.7 NC_001347.2 + 77785 0.66 0.848842
Target:  5'- uUUGUACGCGCGGCcgUGcaGCgGGCCa-- -3'
miRNA:   3'- -AACGUGCGCGCUGa-AC--CGgCUGGaca -5'
1564 5' -58.7 NC_001347.2 + 38945 0.66 0.848842
Target:  5'- cUGCGCGCacagacccuCGGgaUGGCCGGCCUuGUc -3'
miRNA:   3'- aACGUGCGc--------GCUgaACCGGCUGGA-CA- -5'
1564 5' -58.7 NC_001347.2 + 155304 0.66 0.848842
Target:  5'- -aGCugGUG-GACggGGCCGGgCUGg -3'
miRNA:   3'- aaCGugCGCgCUGaaCCGGCUgGACa -5'
1564 5' -58.7 NC_001347.2 + 157764 0.66 0.841041
Target:  5'- -cGCcCGCGCuGAUUUGGCCGuauACCa-- -3'
miRNA:   3'- aaCGuGCGCG-CUGAACCGGC---UGGaca -5'
1564 5' -58.7 NC_001347.2 + 1947 0.66 0.833062
Target:  5'- cUGgGCuGCGCGGCggGGCCGGCg--- -3'
miRNA:   3'- aACgUG-CGCGCUGaaCCGGCUGgaca -5'
1564 5' -58.7 NC_001347.2 + 173956 0.66 0.833062
Target:  5'- -aGCAaaaGUGCGGCUagagcgcgGGCCGcguGCCUGg -3'
miRNA:   3'- aaCGUg--CGCGCUGAa-------CCGGC---UGGACa -5'
1564 5' -58.7 NC_001347.2 + 65878 0.67 0.824911
Target:  5'- -gGCACGC-UGGCg-GGCCGACCg-- -3'
miRNA:   3'- aaCGUGCGcGCUGaaCCGGCUGGaca -5'
1564 5' -58.7 NC_001347.2 + 1441 0.67 0.824911
Target:  5'- -cGUugG-GCGACaaGGCCGGCCa-- -3'
miRNA:   3'- aaCGugCgCGCUGaaCCGGCUGGaca -5'
1564 5' -58.7 NC_001347.2 + 117072 0.67 0.824911
Target:  5'- -gGCACGuCGCGACccagcuuGCCGACCa-- -3'
miRNA:   3'- aaCGUGC-GCGCUGaac----CGGCUGGaca -5'
1564 5' -58.7 NC_001347.2 + 78633 0.67 0.816595
Target:  5'- -gGCGCGCGCGAC---GCCGAacucuaccaCCUGc -3'
miRNA:   3'- aaCGUGCGCGCUGaacCGGCU---------GGACa -5'
1564 5' -58.7 NC_001347.2 + 85524 0.67 0.808121
Target:  5'- -gGCGCGCGCG-CUUGaGCgUGGcCCUGa -3'
miRNA:   3'- aaCGUGCGCGCuGAAC-CG-GCU-GGACa -5'
1564 5' -58.7 NC_001347.2 + 77047 0.68 0.745044
Target:  5'- -gGCACGCGCGugcc-GCCGGCCUc- -3'
miRNA:   3'- aaCGUGCGCGCugaacCGGCUGGAca -5'
1564 5' -58.7 NC_001347.2 + 155780 0.69 0.70677
Target:  5'- gUGCACG-GCGACU--GCgCGACCUGc -3'
miRNA:   3'- aACGUGCgCGCUGAacCG-GCUGGACa -5'
1564 5' -58.7 NC_001347.2 + 126721 0.69 0.704826
Target:  5'- gUGCACGCGCGAaccggguuuucUGGCCG-CCg-- -3'
miRNA:   3'- aACGUGCGCGCUga---------ACCGGCuGGaca -5'
1564 5' -58.7 NC_001347.2 + 174807 0.69 0.697031
Target:  5'- aUGUugGCGCGCGACcugcUGGCCuuguggcGCCUGUg -3'
miRNA:   3'- aACG--UGCGCGCUGa---ACCGGc------UGGACA- -5'
1564 5' -58.7 NC_001347.2 + 126406 0.69 0.67741
Target:  5'- cUGCACGCGCGACcUGGgC-ACCa-- -3'
miRNA:   3'- aACGUGCGCGCUGaACCgGcUGGaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.