Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 5712 | 0.66 | 0.306374 |
|
Target: 5'- -----aGGCGUGGcCUCGGCcGAcCCg -3' miRNA: 3'- uuuaaaCCGUACCaGGGCCGuUUcGG- -5' |
|||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 4222 | 0.67 | 0.262749 |
|
Target: 5'- -----aGGCaAUGGUCauGGCGGuucAGCCg -3' miRNA: 3'- uuuaaaCCG-UACCAGggCCGUU---UCGG- -5' |
|||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 2547 | 0.67 | 0.23908 |
|
Target: 5'- -----gGGCAUGGgguuccacUCCUGGgAAAGCg -3' miRNA: 3'- uuuaaaCCGUACC--------AGGGCCgUUUCGg -5' |
|||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 5445 | 0.68 | 0.231596 |
|
Target: 5'- -----aGGCGUGGaCCCGG-AGAGUg -3' miRNA: 3'- uuuaaaCCGUACCaGGGCCgUUUCGg -5' |
|||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 6545 | 0.68 | 0.21722 |
|
Target: 5'- -----cGGCAugcuugccaaUGGUaCCUGGCuuGGCCc -3' miRNA: 3'- uuuaaaCCGU----------ACCA-GGGCCGuuUCGG- -5' |
|||||||
| 15651 | 3' | -51.2 | NC_004064.1 | + | 6399 | 1.11 | 0.000077 |
|
Target: 5'- gAAAUUUGGCAUGGUCCCGGCAAAGCCa -3' miRNA: 3'- -UUUAAACCGUACCAGGGCCGUUUCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home