miRNA display CGI


Results 41 - 60 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 53801 0.66 0.9999
Target:  5'- ----gGGCAGAGGCGgagGCaCCGGGACGg -3'
miRNA:   3'- agaugCCGUUUUUGCg--UG-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 127970 0.66 0.9999
Target:  5'- cUCggaGaGCGAGAGCaGCcCCCGAAACa -3'
miRNA:   3'- -AGaugC-CGUUUUUG-CGuGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 22799 0.66 0.999923
Target:  5'- gCUGgGGuUGAGGugGgAUCCGGAACGg -3'
miRNA:   3'- aGAUgCC-GUUUUugCgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 168919 0.66 0.999942
Target:  5'- --aGCgGGCAAGAACGgCAa-CGAGACGa -3'
miRNA:   3'- agaUG-CCGUUUUUGC-GUggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 101134 0.66 0.999942
Target:  5'- --cGCGGCGgaggAGAAC-UACCUGggGCGc -3'
miRNA:   3'- agaUGCCGU----UUUUGcGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 40507 0.66 0.999874
Target:  5'- --gGCGGCAGuGGACGCuguuuggaauucgauCCCGAuAGCGa -3'
miRNA:   3'- agaUGCCGUU-UUUGCGu--------------GGGCU-UUGC- -5'
15659 3' -48.5 NC_004065.1 + 190141 0.66 0.9999
Target:  5'- aUCUcCGcGCucguGAGACGCugCCGAcGGCa -3'
miRNA:   3'- -AGAuGC-CGu---UUUUGCGugGGCU-UUGc -5'
15659 3' -48.5 NC_004065.1 + 97551 0.66 0.999923
Target:  5'- uUCUGCGGUacaacaacacGAGGAaGCACCCc-AACGg -3'
miRNA:   3'- -AGAUGCCG----------UUUUUgCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 131460 0.66 0.999923
Target:  5'- uUCUGCGGCAuaaAAAucuCGCGCCgcCGAu--- -3'
miRNA:   3'- -AGAUGCCGU---UUUu--GCGUGG--GCUuugc -5'
15659 3' -48.5 NC_004065.1 + 139466 0.66 0.999923
Target:  5'- --aACGGCAGAAGCGauuuuuCgUCGAGGCGu -3'
miRNA:   3'- agaUGCCGUUUUUGCgu----G-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 134929 0.66 0.999871
Target:  5'- ---cCGGUagGAGAGCGCAUCCucAGCGa -3'
miRNA:   3'- agauGCCG--UUUUUGCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 213726 0.66 0.99991
Target:  5'- --cGCGGCGAc--CGCuccgacuacaccucaGCCCGAGACu -3'
miRNA:   3'- agaUGCCGUUuuuGCG---------------UGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 64222 0.67 0.999578
Target:  5'- gUCgGCGGCGAGGACaagACCuCGAAACu -3'
miRNA:   3'- -AGaUGCCGUUUUUGcg-UGG-GCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 91210 0.67 0.999834
Target:  5'- --cGCGGCAucGGCGCcGCCgGAGAa- -3'
miRNA:   3'- agaUGCCGUuuUUGCG-UGGgCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 110006 0.67 0.999662
Target:  5'- --gGCGcGUAGAAACGCaaGCCCG--GCGg -3'
miRNA:   3'- agaUGC-CGUUUUUGCG--UGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 29905 0.67 0.999655
Target:  5'- uUCgcCGGCGAggaggGAcgcgucuacaucuACGCGCCCGAcgucGACGa -3'
miRNA:   3'- -AGauGCCGUU-----UU-------------UGCGUGGGCU----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 200910 0.67 0.999655
Target:  5'- aCUugGGCGAuaAAACGCcgaucucGCCUcGAGCGc -3'
miRNA:   3'- aGAugCCGUU--UUUGCG-------UGGGcUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 20922 0.67 0.999578
Target:  5'- --aGCGGCGugguggAAGACGCGuacUCCGAGGCc -3'
miRNA:   3'- agaUGCCGU------UUUUGCGU---GGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 125510 0.67 0.999578
Target:  5'- aUCcACGGCGAcccGGCG-GCCuCGAGACGg -3'
miRNA:   3'- -AGaUGCCGUUu--UUGCgUGG-GCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 158713 0.67 0.999578
Target:  5'- --aAUGGUcu--GCGCGCCCGAcguGCGa -3'
miRNA:   3'- agaUGCCGuuuuUGCGUGGGCUu--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.