Results 21 - 40 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15659 | 3' | -48.5 | NC_004065.1 | + | 170712 | 0.74 | 0.9602 |
Target: 5'- gUCUGCGGCGGcagcGAAgGCGCCUccGGCGg -3' miRNA: 3'- -AGAUGCCGUU----UUUgCGUGGGcuUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 24735 | 0.74 | 0.952452 |
Target: 5'- --aGCGGCGAGucuGGCGCACUCGuugGGCGg -3' miRNA: 3'- agaUGCCGUUU---UUGCGUGGGCu--UUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 228996 | 0.74 | 0.9602 |
Target: 5'- --aACGGCGAGGGaGCGCgCGGAGCGa -3' miRNA: 3'- agaUGCCGUUUUUgCGUGgGCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 67283 | 0.73 | 0.970113 |
Target: 5'- --cACGGCGGAGACGCaggACCUGggGgGc -3' miRNA: 3'- agaUGCCGUUUUUGCG---UGGGCuuUgC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 110183 | 0.73 | 0.970113 |
Target: 5'- cUCUGCGGCGGccgcGACGCGCCgccgcccguCGAGAgGg -3' miRNA: 3'- -AGAUGCCGUUu---UUGCGUGG---------GCUUUgC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 138489 | 0.73 | 0.971287 |
Target: 5'- cUCgacgGCGGCGAgcgccucgacauccaGAGCGCGgUCGAGACGu -3' miRNA: 3'- -AGa---UGCCGUU---------------UUUGCGUgGGCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 89095 | 0.73 | 0.972985 |
Target: 5'- uUCUGCGGCGucAGGCGCGugcucaugcCCUGGAugGu -3' miRNA: 3'- -AGAUGCCGUu-UUUGCGU---------GGGCUUugC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 33271 | 0.72 | 0.984422 |
Target: 5'- aUCUugGGCAGGcGCaGCACgCCGAuguugggguaGGCGg -3' miRNA: 3'- -AGAugCCGUUUuUG-CGUG-GGCU----------UUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 197851 | 0.72 | 0.978121 |
Target: 5'- --gGCGGCAGGAGUGCACCUu-GACGg -3' miRNA: 3'- agaUGCCGUUUUUGCGUGGGcuUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 200636 | 0.72 | 0.982498 |
Target: 5'- --gAUGGCGu---CGCGCUCGAGGCGa -3' miRNA: 3'- agaUGCCGUuuuuGCGUGGGCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 55533 | 0.72 | 0.981887 |
Target: 5'- gUCUGCGGCGAGGAacuugauguuaccgUGC-CCCGGgucGACGu -3' miRNA: 3'- -AGAUGCCGUUUUU--------------GCGuGGGCU---UUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 70829 | 0.72 | 0.982296 |
Target: 5'- --gGCGGCGAucgaagagaagaaAGACGCggACCCGGGAUGu -3' miRNA: 3'- agaUGCCGUU-------------UUUGCG--UGGGCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 75804 | 0.72 | 0.982498 |
Target: 5'- --aGCGGCGGcGAgGCACCUGgcACGa -3' miRNA: 3'- agaUGCCGUUuUUgCGUGGGCuuUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 151085 | 0.72 | 0.982498 |
Target: 5'- cCUGCgcgGGCcuGGugGCGCCCGAGcucgGCGa -3' miRNA: 3'- aGAUG---CCGuuUUugCGUGGGCUU----UGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 77024 | 0.72 | 0.98618 |
Target: 5'- --cGCGGCGGcGAUGCGCCgGAcgauGACGa -3' miRNA: 3'- agaUGCCGUUuUUGCGUGGgCU----UUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 193822 | 0.72 | 0.984422 |
Target: 5'- cUCUGCGGCGAAggcAAUGCuACCgaGGGAUGg -3' miRNA: 3'- -AGAUGCCGUUU---UUGCG-UGGg-CUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 26629 | 0.72 | 0.98618 |
Target: 5'- -gUGCGGCGAcagcggGAGCaGCGuCCCGGAAUGa -3' miRNA: 3'- agAUGCCGUU------UUUG-CGU-GGGCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 53852 | 0.72 | 0.984422 |
Target: 5'- cUCUucGCGGCGGu--CGCGCCgGGAugGc -3' miRNA: 3'- -AGA--UGCCGUUuuuGCGUGGgCUUugC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 61736 | 0.72 | 0.982498 |
Target: 5'- cCUACGGCAugguggugGAcgccauggcgcAGCGCAUCaCGGAGCGg -3' miRNA: 3'- aGAUGCCGU--------UU-----------UUGCGUGG-GCUUUGC- -5' |
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15659 | 3' | -48.5 | NC_004065.1 | + | 129989 | 0.71 | 0.989237 |
Target: 5'- cUCUGCGG-AGGAuacCGC-CCCGAGGCa -3' miRNA: 3'- -AGAUGCCgUUUUu--GCGuGGGCUUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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