miRNA display CGI


Results 41 - 60 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 75043 0.75 0.9234
Target:  5'- --aGCGGCuguaccucuuGAAGACGUGCUCGAGGCGg -3'
miRNA:   3'- agaUGCCG----------UUUUUGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 196384 0.77 0.878317
Target:  5'- --gACGGUcGAAGCGCGCCCcGAACGc -3'
miRNA:   3'- agaUGCCGuUUUUGCGUGGGcUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 170428 0.77 0.870932
Target:  5'- gCUGCGGCGGAucgacgaagGACGcCGCCgGAGGCGc -3'
miRNA:   3'- aGAUGCCGUUU---------UUGC-GUGGgCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 19509 0.77 0.870932
Target:  5'- --gACGGCGGAAcCGCugCCGAAcgGCGa -3'
miRNA:   3'- agaUGCCGUUUUuGCGugGGCUU--UGC- -5'
15659 3' -48.5 NC_004065.1 + 41472 0.77 0.870932
Target:  5'- aCUAUGGUAAGcAGCGUGCgCCGggGCGu -3'
miRNA:   3'- aGAUGCCGUUU-UUGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 89095 0.73 0.972985
Target:  5'- uUCUGCGGCGucAGGCGCGugcucaugcCCUGGAugGu -3'
miRNA:   3'- -AGAUGCCGUu-UUUGCGU---------GGGCUUugC- -5'
15659 3' -48.5 NC_004065.1 + 197851 0.72 0.978121
Target:  5'- --gGCGGCAGGAGUGCACCUu-GACGg -3'
miRNA:   3'- agaUGCCGUUUUUGCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 46888 0.7 0.993757
Target:  5'- --gACGGCGAGGAUGCACggCUGGAGgGg -3'
miRNA:   3'- agaUGCCGUUUUUGCGUG--GGCUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 49401 0.71 0.99174
Target:  5'- uUCcGCGGCGAAAuccuCGUuCCgGAGACGg -3'
miRNA:   3'- -AGaUGCCGUUUUu---GCGuGGgCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 61329 0.71 0.990553
Target:  5'- cUCgACGGCGAGAGcCGCggcgACCCGGgcgaaGACGg -3'
miRNA:   3'- -AGaUGCCGUUUUU-GCG----UGGGCU-----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 129989 0.71 0.989237
Target:  5'- cUCUGCGG-AGGAuacCGC-CCCGAGGCa -3'
miRNA:   3'- -AGAUGCCgUUUUu--GCGuGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 173462 0.71 0.987783
Target:  5'- --gGCGGCGcucGACGCcaGCaCCGAAGCGg -3'
miRNA:   3'- agaUGCCGUuu-UUGCG--UG-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 26629 0.72 0.98618
Target:  5'- -gUGCGGCGAcagcggGAGCaGCGuCCCGGAAUGa -3'
miRNA:   3'- agAUGCCGUU------UUUG-CGU-GGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 53852 0.72 0.984422
Target:  5'- cUCUucGCGGCGGu--CGCGCCgGGAugGc -3'
miRNA:   3'- -AGA--UGCCGUUuuuGCGUGGgCUUugC- -5'
15659 3' -48.5 NC_004065.1 + 33271 0.72 0.984422
Target:  5'- aUCUugGGCAGGcGCaGCACgCCGAuguugggguaGGCGg -3'
miRNA:   3'- -AGAugCCGUUUuUG-CGUG-GGCU----------UUGC- -5'
15659 3' -48.5 NC_004065.1 + 200636 0.72 0.982498
Target:  5'- --gAUGGCGu---CGCGCUCGAGGCGa -3'
miRNA:   3'- agaUGCCGUuuuuGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 151085 0.72 0.982498
Target:  5'- cCUGCgcgGGCcuGGugGCGCCCGAGcucgGCGa -3'
miRNA:   3'- aGAUG---CCGuuUUugCGUGGGCUU----UGC- -5'
15659 3' -48.5 NC_004065.1 + 75804 0.72 0.982498
Target:  5'- --aGCGGCGGcGAgGCACCUGgcACGa -3'
miRNA:   3'- agaUGCCGUUuUUgCGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 70829 0.72 0.982296
Target:  5'- --gGCGGCGAucgaagagaagaaAGACGCggACCCGGGAUGu -3'
miRNA:   3'- agaUGCCGUU-------------UUUGCG--UGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 55533 0.72 0.981887
Target:  5'- gUCUGCGGCGAGGAacuugauguuaccgUGC-CCCGGgucGACGu -3'
miRNA:   3'- -AGAUGCCGUUUUU--------------GCGuGGGCU---UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.