miRNA display CGI


Results 21 - 40 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 40845 0.7 0.993757
Target:  5'- gUCUAC-GCucGAAACGCGCUCGAGAg- -3'
miRNA:   3'- -AGAUGcCGu-UUUUGCGUGGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 189073 0.71 0.99174
Target:  5'- --aGCGGCAccaGGAAUaCAUCCGAAACGu -3'
miRNA:   3'- agaUGCCGU---UUUUGcGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 170712 0.74 0.9602
Target:  5'- gUCUGCGGCGGcagcGAAgGCGCCUccGGCGg -3'
miRNA:   3'- -AGAUGCCGUU----UUUgCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 187518 0.77 0.870181
Target:  5'- --gGCGGUAgagugcgaguucaAGAACGCAUCCGAGACa -3'
miRNA:   3'- agaUGCCGU-------------UUUUGCGUGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 133680 0.69 0.997121
Target:  5'- ----aGGCc--GACGCGCCCGAAuACGa -3'
miRNA:   3'- agaugCCGuuuUUGCGUGGGCUU-UGC- -5'
15659 3' -48.5 NC_004065.1 + 174949 0.7 0.996024
Target:  5'- --aGCGGCGGAAacggacACGgACCCGAcggagAACGa -3'
miRNA:   3'- agaUGCCGUUUU------UGCgUGGGCU-----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 19631 0.71 0.990553
Target:  5'- aCUACccaGGCccGAGCGCGagaCCGAGACGc -3'
miRNA:   3'- aGAUG---CCGuuUUUGCGUg--GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 117842 0.78 0.822164
Target:  5'- ---cUGGCGAAAACGCGCCCGAc--- -3'
miRNA:   3'- agauGCCGUUUUUGCGUGGGCUuugc -5'
15659 3' -48.5 NC_004065.1 + 155042 0.7 0.995359
Target:  5'- gUCUACGcgaccGCAuu--CGCGCCCGAGAa- -3'
miRNA:   3'- -AGAUGC-----CGUuuuuGCGUGGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 169814 0.79 0.785962
Target:  5'- --aGCGGCAAcAGCGCGCagaaaCCGAGACGg -3'
miRNA:   3'- agaUGCCGUUuUUGCGUG-----GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 170571 0.71 0.991627
Target:  5'- --aGCGGCAucGAUGCugCCGAuguuuaccgacccGGCGg -3'
miRNA:   3'- agaUGCCGUuuUUGCGugGGCU-------------UUGC- -5'
15659 3' -48.5 NC_004065.1 + 126423 0.7 0.994606
Target:  5'- --gACGGCGAucGCGCACCacgCGAucauGGCGg -3'
miRNA:   3'- agaUGCCGUUuuUGCGUGG---GCU----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 77024 0.72 0.98618
Target:  5'- --cGCGGCGGcGAUGCGCCgGAcgauGACGa -3'
miRNA:   3'- agaUGCCGUUuUUGCGUGGgCU----UUGC- -5'
15659 3' -48.5 NC_004065.1 + 138489 0.73 0.971287
Target:  5'- cUCgacgGCGGCGAgcgccucgacauccaGAGCGCGgUCGAGACGu -3'
miRNA:   3'- -AGa---UGCCGUU---------------UUUGCGUgGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 97120 0.76 0.905534
Target:  5'- gUCcACGGCcAGAACgGCGCCCGcgGCGa -3'
miRNA:   3'- -AGaUGCCGuUUUUG-CGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 102114 0.77 0.870932
Target:  5'- gUCUGCGGCGGcgauAGCGCcCCCGAcGCc -3'
miRNA:   3'- -AGAUGCCGUUu---UUGCGuGGGCUuUGc -5'
15659 3' -48.5 NC_004065.1 + 35062 0.69 0.997567
Target:  5'- -aUugGGCcAGGugGUGCCCGG-ACGg -3'
miRNA:   3'- agAugCCGuUUUugCGUGGGCUuUGC- -5'
15659 3' -48.5 NC_004065.1 + 161732 0.69 0.997525
Target:  5'- --gGCGGCGGAGgugacgGCGUcccgaagGCCCGGAGCu -3'
miRNA:   3'- agaUGCCGUUUU------UGCG-------UGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 89925 0.7 0.996609
Target:  5'- aUCUGCGGCGcguucGGGACGaCGCCCcucaaGAAGgGg -3'
miRNA:   3'- -AGAUGCCGU-----UUUUGC-GUGGG-----CUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 223751 0.7 0.996024
Target:  5'- cCUGacCGGCGAucuGCuGguCCCGAGACGg -3'
miRNA:   3'- aGAU--GCCGUUuu-UG-CguGGGCUUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.