miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 33382 0.66 0.999923
Target:  5'- uUCUGCGcGCGgagccucucGAGGCGCucgcCCCGgcGCa -3'
miRNA:   3'- -AGAUGC-CGU---------UUUUGCGu---GGGCuuUGc -5'
15659 3' -48.5 NC_004065.1 + 130875 0.66 0.999923
Target:  5'- --gGCGGCGGGcGCGUugCUGGAGa- -3'
miRNA:   3'- agaUGCCGUUUuUGCGugGGCUUUgc -5'
15659 3' -48.5 NC_004065.1 + 22799 0.66 0.999923
Target:  5'- gCUGgGGuUGAGGugGgAUCCGGAACGg -3'
miRNA:   3'- aGAUgCC-GUUUUugCgUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 124972 0.66 0.999923
Target:  5'- -gUGCGGCGcgGGCcugaACCUGAAGCa -3'
miRNA:   3'- agAUGCCGUuuUUGcg--UGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 113264 0.66 0.999923
Target:  5'- --cAgGuGCAGAAAC-CGCCCGAcGCGg -3'
miRNA:   3'- agaUgC-CGUUUUUGcGUGGGCUuUGC- -5'
15659 3' -48.5 NC_004065.1 + 131460 0.66 0.999923
Target:  5'- uUCUGCGGCAuaaAAAucuCGCGCCgcCGAu--- -3'
miRNA:   3'- -AGAUGCCGU---UUUu--GCGUGG--GCUuugc -5'
15659 3' -48.5 NC_004065.1 + 213726 0.66 0.99991
Target:  5'- --cGCGGCGAc--CGCuccgacuacaccucaGCCCGAGACu -3'
miRNA:   3'- agaUGCCGUUuuuGCG---------------UGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 127970 0.66 0.9999
Target:  5'- cUCggaGaGCGAGAGCaGCcCCCGAAACa -3'
miRNA:   3'- -AGaugC-CGUUUUUG-CGuGGGCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 176681 0.66 0.9999
Target:  5'- uUCUACaucccCAGAAugGCACCgGgcGCGg -3'
miRNA:   3'- -AGAUGcc---GUUUUugCGUGGgCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 141568 0.66 0.9999
Target:  5'- cUCUugGGCA-----GCGCCCu-GACGg -3'
miRNA:   3'- -AGAugCCGUuuuugCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 129242 0.66 0.9999
Target:  5'- ----aGGCAuuGACGgcCACCCGAuugAGCGa -3'
miRNA:   3'- agaugCCGUuuUUGC--GUGGGCU---UUGC- -5'
15659 3' -48.5 NC_004065.1 + 53801 0.66 0.9999
Target:  5'- ----gGGCAGAGGCGgagGCaCCGGGACGg -3'
miRNA:   3'- agaugCCGUUUUUGCg--UG-GGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 190141 0.66 0.9999
Target:  5'- aUCUcCGcGCucguGAGACGCugCCGAcGGCa -3'
miRNA:   3'- -AGAuGC-CGu---UUUUGCGugGGCU-UUGc -5'
15659 3' -48.5 NC_004065.1 + 43535 0.66 0.9999
Target:  5'- gUCcGCGcGCAGAGACGCuACuCUGAucGCGa -3'
miRNA:   3'- -AGaUGC-CGUUUUUGCG-UG-GGCUu-UGC- -5'
15659 3' -48.5 NC_004065.1 + 12610 0.66 0.9999
Target:  5'- gUCaACGGCGcAGAGCGCgu-CGAGACGu -3'
miRNA:   3'- -AGaUGCCGU-UUUUGCGuggGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 58148 0.66 0.9999
Target:  5'- --gGCGGCGAAAuCGuCGCCggCGGAGCu -3'
miRNA:   3'- agaUGCCGUUUUuGC-GUGG--GCUUUGc -5'
15659 3' -48.5 NC_004065.1 + 102135 0.66 0.9999
Target:  5'- gCUGCGuGCGGAGGCagACCCGGcuCGa -3'
miRNA:   3'- aGAUGC-CGUUUUUGcgUGGGCUuuGC- -5'
15659 3' -48.5 NC_004065.1 + 91756 0.66 0.9999
Target:  5'- --gACGGCGGGAGCGa--CgGggGCGa -3'
miRNA:   3'- agaUGCCGUUUUUGCgugGgCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 139322 0.66 0.9999
Target:  5'- --gACGGCGAGGA-GCGCagGAAACGc -3'
miRNA:   3'- agaUGCCGUUUUUgCGUGggCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 167503 0.66 0.9999
Target:  5'- --gACGGuCAGAGAUGCuCUCGAAgguACGg -3'
miRNA:   3'- agaUGCC-GUUUUUGCGuGGGCUU---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.