Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15659 | 5' | -45.8 | NC_004065.1 | + | 198525 | 0.72 | 0.997929 |
Target: 5'- cGCGgugUCGGACGCGUUgcacugcUCGUGgUCg -3' miRNA: 3'- aCGCaaaAGCUUGUGCAAa------AGCGC-AG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 223798 | 0.72 | 0.998818 |
Target: 5'- cGCGUUgucgCGAaccGCACGg--UCGgGUCg -3' miRNA: 3'- aCGCAAaa--GCU---UGUGCaaaAGCgCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 57492 | 0.72 | 0.998568 |
Target: 5'- gGCGUcUUCGAGgGgGUUUUCGCuGUg -3' miRNA: 3'- aCGCAaAAGCUUgUgCAAAAGCG-CAg -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 37964 | 0.73 | 0.995233 |
Target: 5'- cGCGUgucCGGGCACGa---CGCGUCg -3' miRNA: 3'- aCGCAaaaGCUUGUGCaaaaGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 124521 | 0.73 | 0.997067 |
Target: 5'- cGCGUUcUCGGGCACGUg--CGCc-- -3' miRNA: 3'- aCGCAAaAGCUUGUGCAaaaGCGcag -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 67677 | 0.73 | 0.996535 |
Target: 5'- gUGCGgg-UCGAACACGUaggUCGCc-- -3' miRNA: 3'- -ACGCaaaAGCUUGUGCAaa-AGCGcag -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 191090 | 0.74 | 0.993559 |
Target: 5'- gGCGUgguuauuucUCGcGCACGgugUCGCGUCg -3' miRNA: 3'- aCGCAaa-------AGCuUGUGCaaaAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 41006 | 0.74 | 0.992347 |
Target: 5'- gGCGUcgUCGAACACGUUgaccuccgugagUC-CGUCg -3' miRNA: 3'- aCGCAaaAGCUUGUGCAAa-----------AGcGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 117586 | 0.78 | 0.945471 |
Target: 5'- gGCGguaagUCGGGCGCGUUUUCGCc-- -3' miRNA: 3'- aCGCaaa--AGCUUGUGCAAAAGCGcag -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 199980 | 0.78 | 0.949941 |
Target: 5'- cUGCGgg-UCGGGCAgGauccUUUUCGCGUCg -3' miRNA: 3'- -ACGCaaaAGCUUGUgC----AAAAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 549 | 1.12 | 0.029432 |
Target: 5'- cUGCGUUUUCGAACACGUUUUCGCGUCg -3' miRNA: 3'- -ACGCAAAAGCUUGUGCAAAAGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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