miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 146964 0.67 0.999997
Target:  5'- -uCGUcgUCGAGCGCGgcgUCGCccauGUCg -3'
miRNA:   3'- acGCAaaAGCUUGUGCaaaAGCG----CAG- -5'
15659 5' -45.8 NC_004065.1 + 49578 0.67 0.999998
Target:  5'- uUGCGUcaaaaugcUCGAAUGCGgucuuguUUUUCGCGUg -3'
miRNA:   3'- -ACGCAaa------AGCUUGUGC-------AAAAGCGCAg -5'
15659 5' -45.8 NC_004065.1 + 145928 0.67 0.999998
Target:  5'- gGCGgucgUCGAAUcCGggaUCGUGUCg -3'
miRNA:   3'- aCGCaaa-AGCUUGuGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 37641 0.67 0.999998
Target:  5'- cGCagGUcUUCGAuagugGCACGguaaugcgUCGCGUCg -3'
miRNA:   3'- aCG--CAaAAGCU-----UGUGCaaa-----AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 51621 0.67 0.999998
Target:  5'- aGCGguc-CGGACAgGgggcagaagUCGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUGUgCaaa------AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 75155 0.66 0.999999
Target:  5'- gGCGagcaggaCGAAgACGUg-UCGCGUCa -3'
miRNA:   3'- aCGCaaaa---GCUUgUGCAaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 142792 0.66 0.999999
Target:  5'- cGCGUcg-CGAGgACGUcgugaaacCGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUgUGCAaaa-----GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 123062 0.66 0.999999
Target:  5'- cGCGcaugCGAGCGCGgaugCGCGa- -3'
miRNA:   3'- aCGCaaaaGCUUGUGCaaaaGCGCag -5'
15659 5' -45.8 NC_004065.1 + 203220 0.66 0.999999
Target:  5'- aUGUGgacggaggcUUgGAGCACGUguacUCGUGUCg -3'
miRNA:   3'- -ACGCaa-------AAgCUUGUGCAaa--AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 88682 0.66 1
Target:  5'- cGCGag--CGGACgACGUc--CGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUG-UGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 142371 0.66 1
Target:  5'- aUGCGgucgggggugUCGAagGCGCGcagUUCGCGcUCg -3'
miRNA:   3'- -ACGCaaa-------AGCU--UGUGCaa-AAGCGC-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.