miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 88682 0.66 1
Target:  5'- cGCGag--CGGACgACGUc--CGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUG-UGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 88946 0.67 0.999997
Target:  5'- aGaCGUUcUUGAGCACGggcucgCGCGUg -3'
miRNA:   3'- aC-GCAAaAGCUUGUGCaaaa--GCGCAg -5'
15659 5' -45.8 NC_004065.1 + 99975 0.69 0.999928
Target:  5'- gGCGUgcUCGGGcCGCGgg-UCGuCGUCu -3'
miRNA:   3'- aCGCAaaAGCUU-GUGCaaaAGC-GCAG- -5'
15659 5' -45.8 NC_004065.1 + 117586 0.78 0.945471
Target:  5'- gGCGguaagUCGGGCGCGUUUUCGCc-- -3'
miRNA:   3'- aCGCaaa--AGCUUGUGCAAAAGCGcag -5'
15659 5' -45.8 NC_004065.1 + 119285 0.7 0.999764
Target:  5'- cGUGUUgaCGAGCACGgccauguaccaCGCGUCc -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaa-------GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 119291 0.68 0.999988
Target:  5'- cGUGUggaucCGAGCAgGUcUUCGgGUCg -3'
miRNA:   3'- aCGCAaaa--GCUUGUgCAaAAGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 123062 0.66 0.999999
Target:  5'- cGCGcaugCGAGCGCGgaugCGCGa- -3'
miRNA:   3'- aCGCaaaaGCUUGUGCaaaaGCGCag -5'
15659 5' -45.8 NC_004065.1 + 124521 0.73 0.997067
Target:  5'- cGCGUUcUCGGGCACGUg--CGCc-- -3'
miRNA:   3'- aCGCAAaAGCUUGUGCAaaaGCGcag -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999997
Target:  5'- gGCGguagcaCGGGCAgGccgUCGCGUCg -3'
miRNA:   3'- aCGCaaaa--GCUUGUgCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999996
Target:  5'- gGCGUUcaccUCGAAC-CGccg-CGCGUCc -3'
miRNA:   3'- aCGCAAa---AGCUUGuGCaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 135650 0.72 0.997929
Target:  5'- cUGaCGgggUCGGGCGCGgccggCGCGUCa -3'
miRNA:   3'- -AC-GCaaaAGCUUGUGCaaaa-GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 138106 0.69 0.999946
Target:  5'- aGCGacgUCGGACcgcgACGgcgaUCGCGUCg -3'
miRNA:   3'- aCGCaaaAGCUUG----UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 139678 0.67 0.999997
Target:  5'- cGCGUUcaUCGcGACGCGgacgagUUCGCGg- -3'
miRNA:   3'- aCGCAAa-AGC-UUGUGCaa----AAGCGCag -5'
15659 5' -45.8 NC_004065.1 + 139942 0.69 0.999877
Target:  5'- cGCGUccgCGAACuCGUc--CGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUGuGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 142371 0.66 1
Target:  5'- aUGCGgucgggggugUCGAagGCGCGcagUUCGCGcUCg -3'
miRNA:   3'- -ACGCaaa-------AGCU--UGUGCaa-AAGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 142792 0.66 0.999999
Target:  5'- cGCGUcg-CGAGgACGUcgugaaacCGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUgUGCAaaa-----GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 145928 0.67 0.999998
Target:  5'- gGCGgucgUCGAAUcCGggaUCGUGUCg -3'
miRNA:   3'- aCGCaaa-AGCUUGuGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 146964 0.67 0.999997
Target:  5'- -uCGUcgUCGAGCGCGgcgUCGCccauGUCg -3'
miRNA:   3'- acGCAaaAGCUUGUGCaaaAGCG----CAG- -5'
15659 5' -45.8 NC_004065.1 + 149804 0.7 0.999741
Target:  5'- cGCGag-UCGGACgaGCGccugUCGCGUCu -3'
miRNA:   3'- aCGCaaaAGCUUG--UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 150350 0.68 0.999984
Target:  5'- aUGCGgaugUCGGGCACGUUcggcaccuccCGgGUCa -3'
miRNA:   3'- -ACGCaaa-AGCUUGUGCAAaa--------GCgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.