Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15659 | 5' | -45.8 | NC_004065.1 | + | 229526 | 0.68 | 0.999984 |
Target: 5'- aGCGUgccgCGu-CGCGggUUCGCGcUCg -3' miRNA: 3'- aCGCAaaa-GCuuGUGCaaAAGCGC-AG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 227725 | 0.68 | 0.999978 |
Target: 5'- gUGCGUgaaaGAACACGUUcUCGUa-- -3' miRNA: 3'- -ACGCAaaagCUUGUGCAAaAGCGcag -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 223798 | 0.72 | 0.998818 |
Target: 5'- cGCGUUgucgCGAaccGCACGg--UCGgGUCg -3' miRNA: 3'- aCGCAAaa--GCU---UGUGCaaaAGCgCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 214819 | 0.68 | 0.999978 |
Target: 5'- cGCGUgUUCGAGaaacuCACGUaaacgccUCGCGUUg -3' miRNA: 3'- aCGCAaAAGCUU-----GUGCAaa-----AGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 208708 | 0.71 | 0.999484 |
Target: 5'- gUGCGUaacgCGAGCGCag--UCGCGUUa -3' miRNA: 3'- -ACGCAaaa-GCUUGUGcaaaAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 207668 | 0.67 | 0.999996 |
Target: 5'- gGCGag-UCGAGCACGga--CGUGUg -3' miRNA: 3'- aCGCaaaAGCUUGUGCaaaaGCGCAg -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 203220 | 0.66 | 0.999999 |
Target: 5'- aUGUGgacggaggcUUgGAGCACGUguacUCGUGUCg -3' miRNA: 3'- -ACGCaa-------AAgCUUGUGCAaa--AGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 199980 | 0.78 | 0.949941 |
Target: 5'- cUGCGgg-UCGGGCAgGauccUUUUCGCGUCg -3' miRNA: 3'- -ACGCaaaAGCUUGUgC----AAAAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 198525 | 0.72 | 0.997929 |
Target: 5'- cGCGgugUCGGACGCGUUgcacugcUCGUGgUCg -3' miRNA: 3'- aCGCaaaAGCUUGUGCAAa------AGCGC-AG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 192619 | 0.67 | 0.999997 |
Target: 5'- cGCGccgUCGGACAC-----CGCGUCg -3' miRNA: 3'- aCGCaaaAGCUUGUGcaaaaGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 191090 | 0.74 | 0.993559 |
Target: 5'- gGCGUgguuauuucUCGcGCACGgugUCGCGUCg -3' miRNA: 3'- aCGCAaa-------AGCuUGUGCaaaAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 150350 | 0.68 | 0.999984 |
Target: 5'- aUGCGgaugUCGGGCACGUUcggcaccuccCGgGUCa -3' miRNA: 3'- -ACGCaaa-AGCUUGUGCAAaa--------GCgCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 149804 | 0.7 | 0.999741 |
Target: 5'- cGCGag-UCGGACgaGCGccugUCGCGUCu -3' miRNA: 3'- aCGCaaaAGCUUG--UGCaaa-AGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 146964 | 0.67 | 0.999997 |
Target: 5'- -uCGUcgUCGAGCGCGgcgUCGCccauGUCg -3' miRNA: 3'- acGCAaaAGCUUGUGCaaaAGCG----CAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 145928 | 0.67 | 0.999998 |
Target: 5'- gGCGgucgUCGAAUcCGggaUCGUGUCg -3' miRNA: 3'- aCGCaaa-AGCUUGuGCaaaAGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 142792 | 0.66 | 0.999999 |
Target: 5'- cGCGUcg-CGAGgACGUcgugaaacCGCGUCg -3' miRNA: 3'- aCGCAaaaGCUUgUGCAaaa-----GCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 142371 | 0.66 | 1 |
Target: 5'- aUGCGgucgggggugUCGAagGCGCGcagUUCGCGcUCg -3' miRNA: 3'- -ACGCaaa-------AGCU--UGUGCaa-AAGCGC-AG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 139942 | 0.69 | 0.999877 |
Target: 5'- cGCGUccgCGAACuCGUc--CGCGUCg -3' miRNA: 3'- aCGCAaaaGCUUGuGCAaaaGCGCAG- -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 139678 | 0.67 | 0.999997 |
Target: 5'- cGCGUUcaUCGcGACGCGgacgagUUCGCGg- -3' miRNA: 3'- aCGCAAa-AGC-UUGUGCaa----AAGCGCag -5' |
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15659 | 5' | -45.8 | NC_004065.1 | + | 138106 | 0.69 | 0.999946 |
Target: 5'- aGCGacgUCGGACcgcgACGgcgaUCGCGUCg -3' miRNA: 3'- aCGCaaaAGCUUG----UGCaaa-AGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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