miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 135650 0.72 0.997929
Target:  5'- cUGaCGgggUCGGGCGCGgccggCGCGUCa -3'
miRNA:   3'- -AC-GCaaaAGCUUGUGCaaaa-GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999996
Target:  5'- gGCGUUcaccUCGAAC-CGccg-CGCGUCc -3'
miRNA:   3'- aCGCAAa---AGCUUGuGCaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 132365 0.67 0.999997
Target:  5'- gGCGguagcaCGGGCAgGccgUCGCGUCg -3'
miRNA:   3'- aCGCaaaa--GCUUGUgCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 124521 0.73 0.997067
Target:  5'- cGCGUUcUCGGGCACGUg--CGCc-- -3'
miRNA:   3'- aCGCAAaAGCUUGUGCAaaaGCGcag -5'
15659 5' -45.8 NC_004065.1 + 123062 0.66 0.999999
Target:  5'- cGCGcaugCGAGCGCGgaugCGCGa- -3'
miRNA:   3'- aCGCaaaaGCUUGUGCaaaaGCGCag -5'
15659 5' -45.8 NC_004065.1 + 119291 0.68 0.999988
Target:  5'- cGUGUggaucCGAGCAgGUcUUCGgGUCg -3'
miRNA:   3'- aCGCAaaa--GCUUGUgCAaAAGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 119285 0.7 0.999764
Target:  5'- cGUGUUgaCGAGCACGgccauguaccaCGCGUCc -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaa-------GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 117586 0.78 0.945471
Target:  5'- gGCGguaagUCGGGCGCGUUUUCGCc-- -3'
miRNA:   3'- aCGCaaa--AGCUUGUGCAAAAGCGcag -5'
15659 5' -45.8 NC_004065.1 + 99975 0.69 0.999928
Target:  5'- gGCGUgcUCGGGcCGCGgg-UCGuCGUCu -3'
miRNA:   3'- aCGCAaaAGCUU-GUGCaaaAGC-GCAG- -5'
15659 5' -45.8 NC_004065.1 + 88946 0.67 0.999997
Target:  5'- aGaCGUUcUUGAGCACGggcucgCGCGUg -3'
miRNA:   3'- aC-GCAAaAGCUUGUGCaaaa--GCGCAg -5'
15659 5' -45.8 NC_004065.1 + 88682 0.66 1
Target:  5'- cGCGag--CGGACgACGUc--CGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUG-UGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 78738 0.67 0.999996
Target:  5'- gGCGgugUCGGGCGCGcUUgaCGCGg- -3'
miRNA:   3'- aCGCaaaAGCUUGUGC-AAaaGCGCag -5'
15659 5' -45.8 NC_004065.1 + 76145 0.68 0.999988
Target:  5'- gGUGUUUUUGAACACGaagcaaGCGg- -3'
miRNA:   3'- aCGCAAAAGCUUGUGCaaaag-CGCag -5'
15659 5' -45.8 NC_004065.1 + 75155 0.66 0.999999
Target:  5'- gGCGagcaggaCGAAgACGUg-UCGCGUCa -3'
miRNA:   3'- aCGCaaaa---GCUUgUGCAaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 67677 0.73 0.996535
Target:  5'- gUGCGgg-UCGAACACGUaggUCGCc-- -3'
miRNA:   3'- -ACGCaaaAGCUUGUGCAaa-AGCGcag -5'
15659 5' -45.8 NC_004065.1 + 65702 0.68 0.999984
Target:  5'- gGCGUg--CGAGCugGUggaCGCG-Ca -3'
miRNA:   3'- aCGCAaaaGCUUGugCAaaaGCGCaG- -5'
15659 5' -45.8 NC_004065.1 + 57492 0.72 0.998568
Target:  5'- gGCGUcUUCGAGgGgGUUUUCGCuGUg -3'
miRNA:   3'- aCGCAaAAGCUUgUgCAAAAGCG-CAg -5'
15659 5' -45.8 NC_004065.1 + 51621 0.67 0.999998
Target:  5'- aGCGguc-CGGACAgGgggcagaagUCGCGUCg -3'
miRNA:   3'- aCGCaaaaGCUUGUgCaaa------AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 49578 0.67 0.999998
Target:  5'- uUGCGUcaaaaugcUCGAAUGCGgucuuguUUUUCGCGUg -3'
miRNA:   3'- -ACGCAaa------AGCUUGUGC-------AAAAGCGCAg -5'
15659 5' -45.8 NC_004065.1 + 42937 0.67 0.999996
Target:  5'- cUGCagcucCGAACGCGagcagcUUCGCGUCa -3'
miRNA:   3'- -ACGcaaaaGCUUGUGCaa----AAGCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.