miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 99975 0.69 0.999928
Target:  5'- gGCGUgcUCGGGcCGCGgg-UCGuCGUCu -3'
miRNA:   3'- aCGCAaaAGCUU-GUGCaaaAGC-GCAG- -5'
15659 5' -45.8 NC_004065.1 + 138106 0.69 0.999946
Target:  5'- aGCGacgUCGGACcgcgACGgcgaUCGCGUCg -3'
miRNA:   3'- aCGCaaaAGCUUG----UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 24944 0.68 0.999959
Target:  5'- aGCGUUUUCGAGCucgagACGaugggUCG-GUCg -3'
miRNA:   3'- aCGCAAAAGCUUG-----UGCaaa--AGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 214819 0.68 0.999978
Target:  5'- cGCGUgUUCGAGaaacuCACGUaaacgccUCGCGUUg -3'
miRNA:   3'- aCGCAaAAGCUU-----GUGCAaa-----AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 227725 0.68 0.999978
Target:  5'- gUGCGUgaaaGAACACGUUcUCGUa-- -3'
miRNA:   3'- -ACGCAaaagCUUGUGCAAaAGCGcag -5'
15659 5' -45.8 NC_004065.1 + 208708 0.71 0.999484
Target:  5'- gUGCGUaacgCGAGCGCag--UCGCGUUa -3'
miRNA:   3'- -ACGCAaaa-GCUUGUGcaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 9831 0.7 0.999672
Target:  5'- gGUGUUagUGAAUACG---UCGCGUCg -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 149804 0.7 0.999741
Target:  5'- cGCGag-UCGGACgaGCGccugUCGCGUCu -3'
miRNA:   3'- aCGCaaaAGCUUG--UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 119285 0.7 0.999764
Target:  5'- cGUGUUgaCGAGCACGgccauguaccaCGCGUCc -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaa-------GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 139942 0.69 0.999877
Target:  5'- cGCGUccgCGAACuCGUc--CGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUGuGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 229526 0.68 0.999984
Target:  5'- aGCGUgccgCGu-CGCGggUUCGCGcUCg -3'
miRNA:   3'- aCGCAaaa-GCuuGUGCaaAAGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 223798 0.72 0.998818
Target:  5'- cGCGUUgucgCGAaccGCACGg--UCGgGUCg -3'
miRNA:   3'- aCGCAAaa--GCU---UGUGCaaaAGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 57492 0.72 0.998568
Target:  5'- gGCGUcUUCGAGgGgGUUUUCGCuGUg -3'
miRNA:   3'- aCGCAaAAGCUUgUgCAAAAGCG-CAg -5'
15659 5' -45.8 NC_004065.1 + 135650 0.72 0.997929
Target:  5'- cUGaCGgggUCGGGCGCGgccggCGCGUCa -3'
miRNA:   3'- -AC-GCaaaAGCUUGUGCaaaa-GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 198525 0.72 0.997929
Target:  5'- cGCGgugUCGGACGCGUUgcacugcUCGUGgUCg -3'
miRNA:   3'- aCGCaaaAGCUUGUGCAAa------AGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 67677 0.73 0.996535
Target:  5'- gUGCGgg-UCGAACACGUaggUCGCc-- -3'
miRNA:   3'- -ACGCaaaAGCUUGUGCAaa-AGCGcag -5'
15659 5' -45.8 NC_004065.1 + 37964 0.73 0.995233
Target:  5'- cGCGUgucCGGGCACGa---CGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUGUGCaaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 191090 0.74 0.993559
Target:  5'- gGCGUgguuauuucUCGcGCACGgugUCGCGUCg -3'
miRNA:   3'- aCGCAaa-------AGCuUGUGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 199980 0.78 0.949941
Target:  5'- cUGCGgg-UCGGGCAgGauccUUUUCGCGUCg -3'
miRNA:   3'- -ACGCaaaAGCUUGUgC----AAAAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 203220 0.66 0.999999
Target:  5'- aUGUGgacggaggcUUgGAGCACGUguacUCGUGUCg -3'
miRNA:   3'- -ACGCaa-------AAgCUUGUGCAaa--AGCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.