miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 5' -45.8 NC_004065.1 + 119291 0.68 0.999988
Target:  5'- cGUGUggaucCGAGCAgGUcUUCGgGUCg -3'
miRNA:   3'- aCGCAaaa--GCUUGUgCAaAAGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 76145 0.68 0.999988
Target:  5'- gGUGUUUUUGAACACGaagcaaGCGg- -3'
miRNA:   3'- aCGCAAAAGCUUGUGCaaaag-CGCag -5'
15659 5' -45.8 NC_004065.1 + 65702 0.68 0.999984
Target:  5'- gGCGUg--CGAGCugGUggaCGCG-Ca -3'
miRNA:   3'- aCGCAaaaGCUUGugCAaaaGCGCaG- -5'
15659 5' -45.8 NC_004065.1 + 29623 0.68 0.999984
Target:  5'- gGCGUcgucgacgUCGGGCGCGUagauguagaCGCGUCc -3'
miRNA:   3'- aCGCAaa------AGCUUGUGCAaaa------GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 150350 0.68 0.999984
Target:  5'- aUGCGgaugUCGGGCACGUUcggcaccuccCGgGUCa -3'
miRNA:   3'- -ACGCaaa-AGCUUGUGCAAaa--------GCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 229526 0.68 0.999984
Target:  5'- aGCGUgccgCGu-CGCGggUUCGCGcUCg -3'
miRNA:   3'- aCGCAaaa-GCuuGUGCaaAAGCGC-AG- -5'
15659 5' -45.8 NC_004065.1 + 227725 0.68 0.999978
Target:  5'- gUGCGUgaaaGAACACGUUcUCGUa-- -3'
miRNA:   3'- -ACGCAaaagCUUGUGCAAaAGCGcag -5'
15659 5' -45.8 NC_004065.1 + 214819 0.68 0.999978
Target:  5'- cGCGUgUUCGAGaaacuCACGUaaacgccUCGCGUUg -3'
miRNA:   3'- aCGCAaAAGCUU-----GUGCAaa-----AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 24944 0.68 0.999959
Target:  5'- aGCGUUUUCGAGCucgagACGaugggUCG-GUCg -3'
miRNA:   3'- aCGCAAAAGCUUG-----UGCaaa--AGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 138106 0.69 0.999946
Target:  5'- aGCGacgUCGGACcgcgACGgcgaUCGCGUCg -3'
miRNA:   3'- aCGCaaaAGCUUG----UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 99975 0.69 0.999928
Target:  5'- gGCGUgcUCGGGcCGCGgg-UCGuCGUCu -3'
miRNA:   3'- aCGCAaaAGCUU-GUGCaaaAGC-GCAG- -5'
15659 5' -45.8 NC_004065.1 + 139942 0.69 0.999877
Target:  5'- cGCGUccgCGAACuCGUc--CGCGUCg -3'
miRNA:   3'- aCGCAaaaGCUUGuGCAaaaGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 119285 0.7 0.999764
Target:  5'- cGUGUUgaCGAGCACGgccauguaccaCGCGUCc -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaa-------GCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 149804 0.7 0.999741
Target:  5'- cGCGag-UCGGACgaGCGccugUCGCGUCu -3'
miRNA:   3'- aCGCaaaAGCUUG--UGCaaa-AGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 9831 0.7 0.999672
Target:  5'- gGUGUUagUGAAUACG---UCGCGUCg -3'
miRNA:   3'- aCGCAAaaGCUUGUGCaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 30878 0.7 0.999568
Target:  5'- gGCGggUUCGAGCGCccgcaggGCGUCg -3'
miRNA:   3'- aCGCaaAAGCUUGUGcaaaag-CGCAG- -5'
15659 5' -45.8 NC_004065.1 + 208708 0.71 0.999484
Target:  5'- gUGCGUaacgCGAGCGCag--UCGCGUUa -3'
miRNA:   3'- -ACGCAaaa-GCUUGUGcaaaAGCGCAG- -5'
15659 5' -45.8 NC_004065.1 + 19560 0.71 0.999484
Target:  5'- cUGCGUgggugUCGGugGCGgcgguaGCGUCg -3'
miRNA:   3'- -ACGCAaa---AGCUugUGCaaaag-CGCAG- -5'
15659 5' -45.8 NC_004065.1 + 223798 0.72 0.998818
Target:  5'- cGCGUUgucgCGAaccGCACGg--UCGgGUCg -3'
miRNA:   3'- aCGCAAaa--GCU---UGUGCaaaAGCgCAG- -5'
15659 5' -45.8 NC_004065.1 + 57492 0.72 0.998568
Target:  5'- gGCGUcUUCGAGgGgGUUUUCGCuGUg -3'
miRNA:   3'- aCGCAaAAGCUUgUgCAAAAGCG-CAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.