miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 3' -54.9 NC_001347.2 + 183969 0.66 0.978835
Target:  5'- gGCaGUGGCGGgccCGAUGGGGcUCGCGAu -3'
miRNA:   3'- -UGcCGCUGCCa--GUUGUCCC-AGUGUUc -5'
1566 3' -54.9 NC_001347.2 + 148723 0.66 0.97653
Target:  5'- cAUGuuCGACGGUCAGaCGGGGUUgauCAAGc -3'
miRNA:   3'- -UGCc-GCUGCCAGUU-GUCCCAGu--GUUC- -5'
1566 3' -54.9 NC_001347.2 + 154943 0.66 0.974045
Target:  5'- cCGGCGACGGcUCcgccGCAGcuagugguguuGGUCGCAu- -3'
miRNA:   3'- uGCCGCUGCC-AGu---UGUC-----------CCAGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 140622 0.66 0.974045
Target:  5'- cCGaGCGACGGUCu---GGGUgGCGGu -3'
miRNA:   3'- uGC-CGCUGCCAGuuguCCCAgUGUUc -5'
1566 3' -54.9 NC_001347.2 + 154499 0.66 0.974045
Target:  5'- cACGGCcaGAUGGUU--CAGGGUgACAu- -3'
miRNA:   3'- -UGCCG--CUGCCAGuuGUCCCAgUGUuc -5'
1566 3' -54.9 NC_001347.2 + 135807 0.66 0.974045
Target:  5'- cGCGGCGGguggacCGGgaagcCGGCGGaGGUCGCcGGg -3'
miRNA:   3'- -UGCCGCU------GCCa----GUUGUC-CCAGUGuUC- -5'
1566 3' -54.9 NC_001347.2 + 75413 0.66 0.971375
Target:  5'- gGCGGCcguGGCGG-CGGCAGcGG-CGCAGa -3'
miRNA:   3'- -UGCCG---CUGCCaGUUGUC-CCaGUGUUc -5'
1566 3' -54.9 NC_001347.2 + 144577 0.66 0.971375
Target:  5'- aACGGUGGCGG-CGGCcGGGcUCguggaggagGCAAGa -3'
miRNA:   3'- -UGCCGCUGCCaGUUGuCCC-AG---------UGUUC- -5'
1566 3' -54.9 NC_001347.2 + 60631 0.66 0.971375
Target:  5'- cCGGCGAC-GUCGAgAGGGUaacuauguaccgUGCGGGg -3'
miRNA:   3'- uGCCGCUGcCAGUUgUCCCA------------GUGUUC- -5'
1566 3' -54.9 NC_001347.2 + 165854 0.66 0.971375
Target:  5'- cAUGGCGAggcCGG-CGGCAGGGaCACc-- -3'
miRNA:   3'- -UGCCGCU---GCCaGUUGUCCCaGUGuuc -5'
1566 3' -54.9 NC_001347.2 + 158034 0.66 0.968513
Target:  5'- -gGGCGcCGGaCAGCAGGcgcGUCACGu- -3'
miRNA:   3'- ugCCGCuGCCaGUUGUCC---CAGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 152308 0.66 0.968513
Target:  5'- aGCGGCGGCGGUggUGACuGGGg-ACGGu -3'
miRNA:   3'- -UGCCGCUGCCA--GUUGuCCCagUGUUc -5'
1566 3' -54.9 NC_001347.2 + 173832 0.66 0.968513
Target:  5'- gGCGGCGGCGGagGaggaggagGCGGcGGUUugGAu -3'
miRNA:   3'- -UGCCGCUGCCagU--------UGUC-CCAGugUUc -5'
1566 3' -54.9 NC_001347.2 + 112649 0.66 0.968513
Target:  5'- cCGGUGAUGGU-GGCGGcGG-CACGGGa -3'
miRNA:   3'- uGCCGCUGCCAgUUGUC-CCaGUGUUC- -5'
1566 3' -54.9 NC_001347.2 + 228732 0.66 0.968513
Target:  5'- cGCGGCGgauuuccgcGCGGggGACGGGGUagcCGAGu -3'
miRNA:   3'- -UGCCGC---------UGCCagUUGUCCCAgu-GUUC- -5'
1566 3' -54.9 NC_001347.2 + 214697 0.66 0.968513
Target:  5'- cACGGCGGCGaaCAGCAGcaUCGCGAc -3'
miRNA:   3'- -UGCCGCUGCcaGUUGUCccAGUGUUc -5'
1566 3' -54.9 NC_001347.2 + 74887 0.67 0.96352
Target:  5'- uGCGGUGGCGGUCAcUGGGcagacugagcacguuGUCGCuGGu -3'
miRNA:   3'- -UGCCGCUGCCAGUuGUCC---------------CAGUGuUC- -5'
1566 3' -54.9 NC_001347.2 + 62543 0.67 0.96219
Target:  5'- gGCGGCGAUGGUCAuguucuccCAGGacCACGu- -3'
miRNA:   3'- -UGCCGCUGCCAGUu-------GUCCcaGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 117862 0.67 0.96219
Target:  5'- cGCGGCGAcCGcGUCAGaCGGGGcgacCACGu- -3'
miRNA:   3'- -UGCCGCU-GC-CAGUU-GUCCCa---GUGUuc -5'
1566 3' -54.9 NC_001347.2 + 41173 0.67 0.958719
Target:  5'- cGCGGCGGUGG-CGACuGGGccgacagCGCAAGc -3'
miRNA:   3'- -UGCCGCUGCCaGUUGuCCCa------GUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.