miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 3' -54.9 NC_001347.2 + 1965 0.69 0.886784
Target:  5'- cCGGCGACGGggacggCGGCGGGG--ACGAc -3'
miRNA:   3'- uGCCGCUGCCa-----GUUGUCCCagUGUUc -5'
1566 3' -54.9 NC_001347.2 + 39051 0.67 0.955035
Target:  5'- cGCGGCGACaGUUGacGCAGGuccGUCGCGc- -3'
miRNA:   3'- -UGCCGCUGcCAGU--UGUCC---CAGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 41173 0.67 0.958719
Target:  5'- cGCGGCGGUGG-CGACuGGGccgacagCGCAAGc -3'
miRNA:   3'- -UGCCGCUGCCaGUUGuCCCa------GUGUUC- -5'
1566 3' -54.9 NC_001347.2 + 44035 0.72 0.76519
Target:  5'- gUGGCGACGG-CAGCGGuGGUgGCGc- -3'
miRNA:   3'- uGCCGCUGCCaGUUGUC-CCAgUGUuc -5'
1566 3' -54.9 NC_001347.2 + 47130 0.69 0.898501
Target:  5'- gGCGGCGGCGGcaauggccgcggCAGCGGGGagGaGAGg -3'
miRNA:   3'- -UGCCGCUGCCa-----------GUUGUCCCagUgUUC- -5'
1566 3' -54.9 NC_001347.2 + 60631 0.66 0.971375
Target:  5'- cCGGCGAC-GUCGAgAGGGUaacuauguaccgUGCGGGg -3'
miRNA:   3'- uGCCGCUGcCAGUUgUCCCA------------GUGUUC- -5'
1566 3' -54.9 NC_001347.2 + 62543 0.67 0.96219
Target:  5'- gGCGGCGAUGGUCAuguucuccCAGGacCACGu- -3'
miRNA:   3'- -UGCCGCUGCCAGUu-------GUCCcaGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 63824 0.69 0.917555
Target:  5'- aGCGGCGGCGG-CGaugGCGGGG-CugGu- -3'
miRNA:   3'- -UGCCGCUGCCaGU---UGUCCCaGugUuc -5'
1566 3' -54.9 NC_001347.2 + 74108 0.72 0.792391
Target:  5'- cCGGaCGACGGUCAgccGCGGGGUUgauacccaGCGAc -3'
miRNA:   3'- uGCC-GCUGCCAGU---UGUCCCAG--------UGUUc -5'
1566 3' -54.9 NC_001347.2 + 74887 0.67 0.96352
Target:  5'- uGCGGUGGCGGUCAcUGGGcagacugagcacguuGUCGCuGGu -3'
miRNA:   3'- -UGCCGCUGCCAGUuGUCC---------------CAGUGuUC- -5'
1566 3' -54.9 NC_001347.2 + 75413 0.66 0.971375
Target:  5'- gGCGGCcguGGCGG-CGGCAGcGG-CGCAGa -3'
miRNA:   3'- -UGCCG---CUGCCaGUUGUC-CCaGUGUUc -5'
1566 3' -54.9 NC_001347.2 + 100877 0.68 0.92777
Target:  5'- gGCGGCG-CGGcgCAGCGccggccauucuccGGGUCGCGc- -3'
miRNA:   3'- -UGCCGCuGCCa-GUUGU-------------CCCAGUGUuc -5'
1566 3' -54.9 NC_001347.2 + 105087 0.67 0.950733
Target:  5'- gACGGCGACgaccgcaGGUUAGCGGcGaGUCACc-- -3'
miRNA:   3'- -UGCCGCUG-------CCAGUUGUC-C-CAGUGuuc -5'
1566 3' -54.9 NC_001347.2 + 112649 0.66 0.968513
Target:  5'- cCGGUGAUGGU-GGCGGcGG-CACGGGa -3'
miRNA:   3'- uGCCGCUGCCAgUUGUC-CCaGUGUUC- -5'
1566 3' -54.9 NC_001347.2 + 116504 0.75 0.598591
Target:  5'- cACGGUGACG--CGGCAGGGUCACu-- -3'
miRNA:   3'- -UGCCGCUGCcaGUUGUCCCAGUGuuc -5'
1566 3' -54.9 NC_001347.2 + 117862 0.67 0.96219
Target:  5'- cGCGGCGAcCGcGUCAGaCGGGGcgacCACGu- -3'
miRNA:   3'- -UGCCGCU-GC-CAGUU-GUCCCa---GUGUuc -5'
1566 3' -54.9 NC_001347.2 + 118714 0.67 0.954655
Target:  5'- gACGGCGACGGUacuuuugCAGCucGGGUgGgAAa -3'
miRNA:   3'- -UGCCGCUGCCA-------GUUGu-CCCAgUgUUc -5'
1566 3' -54.9 NC_001347.2 + 135807 0.66 0.974045
Target:  5'- cGCGGCGGguggacCGGgaagcCGGCGGaGGUCGCcGGg -3'
miRNA:   3'- -UGCCGCU------GCCa----GUUGUC-CCAGUGuUC- -5'
1566 3' -54.9 NC_001347.2 + 140576 0.67 0.947015
Target:  5'- -gGGCGGCGGUgcUGGCGGGGgugguggACGAGa -3'
miRNA:   3'- ugCCGCUGCCA--GUUGUCCCag-----UGUUC- -5'
1566 3' -54.9 NC_001347.2 + 140622 0.66 0.974045
Target:  5'- cCGaGCGACGGUCu---GGGUgGCGGu -3'
miRNA:   3'- uGC-CGCUGCCAGuuguCCCAgUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.