miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 5' -57.3 NC_001347.2 + 167954 0.66 0.94466
Target:  5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3'
miRNA:   3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5'
1566 5' -57.3 NC_001347.2 + 78619 0.66 0.94466
Target:  5'- aCUCCAUGAgcCUGGgCGCgCGCgaCGCCGa -3'
miRNA:   3'- gGGGGUAUUa-GACCaGCG-GCG--GUGGC- -5'
1566 5' -57.3 NC_001347.2 + 175398 0.66 0.943374
Target:  5'- cCCCCCAccUAcgagcaggccauggGUCUgugcccgacgacGGUuuccacgccacCGCCGCCACCa -3'
miRNA:   3'- -GGGGGU--AU--------------UAGA------------CCA-----------GCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 195392 0.66 0.940299
Target:  5'- gCUCCGc-GUCgcuUCGCCGCCACCu -3'
miRNA:   3'- gGGGGUauUAGaccAGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 90791 0.66 0.940299
Target:  5'- uCCUCCGUcGUCc--UCGCgGCCGCCa -3'
miRNA:   3'- -GGGGGUAuUAGaccAGCGgCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 188143 0.66 0.940299
Target:  5'- -gCCCAUGGuucUCUGG-CaCCGgCCGCCGa -3'
miRNA:   3'- ggGGGUAUU---AGACCaGcGGC-GGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 93971 0.66 0.939851
Target:  5'- gCCCCgccgacgGUGAUUcgUGGUCGUgGCCaACUGg -3'
miRNA:   3'- gGGGG-------UAUUAG--ACCAGCGgCGG-UGGC- -5'
1566 5' -57.3 NC_001347.2 + 152517 0.66 0.935722
Target:  5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3'
miRNA:   3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 155955 0.66 0.930928
Target:  5'- uUCUCCAUcagGAUCUGGU-GCagGCCACgCGg -3'
miRNA:   3'- -GGGGGUA---UUAGACCAgCGg-CGGUG-GC- -5'
1566 5' -57.3 NC_001347.2 + 208723 0.66 0.930928
Target:  5'- gCgCCGUGGUCUcGGUCGCCaGgCugUGg -3'
miRNA:   3'- gGgGGUAUUAGA-CCAGCGG-CgGugGC- -5'
1566 5' -57.3 NC_001347.2 + 26860 0.66 0.925916
Target:  5'- aCgCCCGUGGUgUGGUCGgCaCGCUgggACCa -3'
miRNA:   3'- -GgGGGUAUUAgACCAGC-G-GCGG---UGGc -5'
1566 5' -57.3 NC_001347.2 + 152721 0.67 0.920686
Target:  5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3'
miRNA:   3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 148073 0.67 0.915238
Target:  5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3'
miRNA:   3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 67701 0.67 0.909574
Target:  5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 116864 0.67 0.897603
Target:  5'- uCCCCCGUAGcccuccUCU--UCGCCGCCcgcgcGCCc -3'
miRNA:   3'- -GGGGGUAUU------AGAccAGCGGCGG-----UGGc -5'
1566 5' -57.3 NC_001347.2 + 91059 0.67 0.897603
Target:  5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3'
miRNA:   3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 178818 0.67 0.897603
Target:  5'- aCCCCUuc-GUCcuc-CGCCGCCACCa -3'
miRNA:   3'- -GGGGGuauUAGaccaGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 195438 0.67 0.8913
Target:  5'- aCCCCGUgGAUCa----GCCGCCGCCu -3'
miRNA:   3'- gGGGGUA-UUAGaccagCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 97586 0.68 0.88479
Target:  5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3'
miRNA:   3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 80837 0.68 0.880786
Target:  5'- cCCUCgCGUGGUCcGcGUCGCCcacgccacuaccaccGCCGCCGc -3'
miRNA:   3'- -GGGG-GUAUUAGaC-CAGCGG---------------CGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.