miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 5' -57.3 NC_001347.2 + 192108 1.09 0.003776
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 175490 0.8 0.292303
Target:  5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3'
miRNA:   3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 156619 0.77 0.402474
Target:  5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3'
miRNA:   3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 21396 0.75 0.513069
Target:  5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3'
miRNA:   3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 906 0.74 0.535595
Target:  5'- cCCCCCGccccUUGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGACCAGCGgCGGUGgC- -5'
1566 5' -57.3 NC_001347.2 + 147925 0.74 0.535595
Target:  5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3'
miRNA:   3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 174250 0.74 0.564219
Target:  5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3'
miRNA:   3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5'
1566 5' -57.3 NC_001347.2 + 191961 0.74 0.564219
Target:  5'- aCCUCGcucGUCgcuGUCGCCGCCACCGc -3'
miRNA:   3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 88222 0.73 0.632242
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 102979 0.7 0.783472
Target:  5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3'
miRNA:   3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5'
1566 5' -57.3 NC_001347.2 + 67350 0.7 0.784351
Target:  5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3'
miRNA:   3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 109817 0.7 0.792208
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 128120 0.7 0.765636
Target:  5'- gCCCgCGUugcccCUG-UCGCCGCCGCCa -3'
miRNA:   3'- -GGGgGUAuua--GACcAGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 88519 0.7 0.765636
Target:  5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3'
miRNA:   3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 195666 0.69 0.825762
Target:  5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3'
miRNA:   3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5'
1566 5' -57.3 NC_001347.2 + 194486 0.69 0.800812
Target:  5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3'
miRNA:   3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5'
1566 5' -57.3 NC_001347.2 + 85318 0.69 0.809278
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 200340 0.69 0.817597
Target:  5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3'
miRNA:   3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5'
1566 5' -57.3 NC_001347.2 + 225842 0.69 0.82657
Target:  5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3'
miRNA:   3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 82889 0.69 0.833767
Target:  5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3'
miRNA:   3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.