Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1566 | 5' | -57.3 | NC_001347.2 | + | 191961 | 0.74 | 0.564219 |
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Target: 5'- aCCUCGcucGUCgcuGUCGCCGCCACCGc -3' miRNA: 3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 906 | 0.74 | 0.535595 |
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Target: 5'- cCCCCCGccccUUGGUCGCgGCCGCgGg -3' miRNA: 3'- -GGGGGUauuaGACCAGCGgCGGUGgC- -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 147925 | 0.74 | 0.535595 |
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Target: 5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3' miRNA: 3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 21396 | 0.75 | 0.513069 |
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Target: 5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3' miRNA: 3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 156619 | 0.77 | 0.402474 |
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Target: 5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3' miRNA: 3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 175490 | 0.8 | 0.292303 |
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Target: 5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3' miRNA: 3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5' |
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| 1566 | 5' | -57.3 | NC_001347.2 | + | 192108 | 1.09 | 0.003776 |
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Target: 5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3' miRNA: 3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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