miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 5' -57.3 NC_001347.2 + 906 0.74 0.535595
Target:  5'- cCCCCCGccccUUGGUCGCgGCCGCgGg -3'
miRNA:   3'- -GGGGGUauuaGACCAGCGgCGGUGgC- -5'
1566 5' -57.3 NC_001347.2 + 21396 0.75 0.513069
Target:  5'- gCCCUCAgcgugcucagCUGGUggcucaUGCCGCCACCGg -3'
miRNA:   3'- -GGGGGUauua------GACCA------GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 26860 0.66 0.925916
Target:  5'- aCgCCCGUGGUgUGGUCGgCaCGCUgggACCa -3'
miRNA:   3'- -GgGGGUAUUAgACCAGC-G-GCGG---UGGc -5'
1566 5' -57.3 NC_001347.2 + 27991 0.68 0.856754
Target:  5'- aCCCCCAcccguGUCgc--CGCCGUCACCa -3'
miRNA:   3'- -GGGGGUau---UAGaccaGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 67350 0.7 0.784351
Target:  5'- aCCCCgCAgccgccgccGUCGCCGCCGCCu -3'
miRNA:   3'- -GGGG-GUauuagac--CAGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 67701 0.67 0.909574
Target:  5'- gCUCCGUcucguUCUuGcCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUAuu---AGAcCaGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 78619 0.66 0.94466
Target:  5'- aCUCCAUGAgcCUGGgCGCgCGCgaCGCCGa -3'
miRNA:   3'- gGGGGUAUUa-GACCaGCG-GCG--GUGGC- -5'
1566 5' -57.3 NC_001347.2 + 80837 0.68 0.880786
Target:  5'- cCCUCgCGUGGUCcGcGUCGCCcacgccacuaccaccGCCGCCGc -3'
miRNA:   3'- -GGGG-GUAUUAGaC-CAGCGG---------------CGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 82889 0.69 0.833767
Target:  5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3'
miRNA:   3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 85318 0.69 0.809278
Target:  5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3'
miRNA:   3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 88222 0.73 0.632242
Target:  5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3'
miRNA:   3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 88519 0.7 0.765636
Target:  5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3'
miRNA:   3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 90791 0.66 0.940299
Target:  5'- uCCUCCGUcGUCc--UCGCgGCCGCCa -3'
miRNA:   3'- -GGGGGUAuUAGaccAGCGgCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 91059 0.67 0.897603
Target:  5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3'
miRNA:   3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 93971 0.66 0.939851
Target:  5'- gCCCCgccgacgGUGAUUcgUGGUCGUgGCCaACUGg -3'
miRNA:   3'- gGGGG-------UAUUAG--ACCAGCGgCGG-UGGC- -5'
1566 5' -57.3 NC_001347.2 + 97586 0.68 0.88479
Target:  5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3'
miRNA:   3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 101684 0.68 0.856754
Target:  5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3'
miRNA:   3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 102979 0.7 0.783472
Target:  5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3'
miRNA:   3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5'
1566 5' -57.3 NC_001347.2 + 109817 0.7 0.792208
Target:  5'- -aCCCAaac----GUCGCCGCCACCGg -3'
miRNA:   3'- ggGGGUauuagacCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 116657 0.68 0.864053
Target:  5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3'
miRNA:   3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.