miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1566 5' -57.3 NC_001347.2 + 225842 0.69 0.82657
Target:  5'- aCCCCCAgcgccaccaccgCUGc-CGUCGCCACCGc -3'
miRNA:   3'- -GGGGGUauua--------GACcaGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 208723 0.66 0.930928
Target:  5'- gCgCCGUGGUCUcGGUCGCCaGgCugUGg -3'
miRNA:   3'- gGgGGUAUUAGA-CCAGCGG-CgGugGC- -5'
1566 5' -57.3 NC_001347.2 + 200955 0.68 0.871162
Target:  5'- aUCCCCAUcGUC--GUCGCCuaUACCGg -3'
miRNA:   3'- -GGGGGUAuUAGacCAGCGGcgGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 200340 0.69 0.817597
Target:  5'- -gCCCGUGGUCUGGcCGCCGg-GCUGg -3'
miRNA:   3'- ggGGGUAUUAGACCaGCGGCggUGGC- -5'
1566 5' -57.3 NC_001347.2 + 195666 0.69 0.825762
Target:  5'- gCCCgAgGAUCUGG-CgGCCGCCGgCGg -3'
miRNA:   3'- gGGGgUaUUAGACCaG-CGGCGGUgGC- -5'
1566 5' -57.3 NC_001347.2 + 195438 0.67 0.8913
Target:  5'- aCCCCGUgGAUCa----GCCGCCGCCu -3'
miRNA:   3'- gGGGGUA-UUAGaccagCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 195392 0.66 0.940299
Target:  5'- gCUCCGc-GUCgcuUCGCCGCCACCu -3'
miRNA:   3'- gGGGGUauUAGaccAGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 194486 0.69 0.800812
Target:  5'- gCUCCCGcuGUgCUGGcCGCCGCUGCaCGg -3'
miRNA:   3'- -GGGGGUauUA-GACCaGCGGCGGUG-GC- -5'
1566 5' -57.3 NC_001347.2 + 192108 1.09 0.003776
Target:  5'- uCCCCCAUAAUCUGGUCGCCGCCACCGc -3'
miRNA:   3'- -GGGGGUAUUAGACCAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 191961 0.74 0.564219
Target:  5'- aCCUCGcucGUCgcuGUCGCCGCCACCGc -3'
miRNA:   3'- gGGGGUau-UAGac-CAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 188143 0.66 0.940299
Target:  5'- -gCCCAUGGuucUCUGG-CaCCGgCCGCCGa -3'
miRNA:   3'- ggGGGUAUU---AGACCaGcGGC-GGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 178866 0.68 0.864053
Target:  5'- gCCUCCGUcgagagcgAGUUguccucGUCGCCGCCGCUGc -3'
miRNA:   3'- -GGGGGUA--------UUAGac----CAGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 178818 0.67 0.897603
Target:  5'- aCCCCUuc-GUCcuc-CGCCGCCACCa -3'
miRNA:   3'- -GGGGGuauUAGaccaGCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 175490 0.8 0.292303
Target:  5'- aCCCCCGUAcugcCUGGuuaguUCGCCGUCGCCGc -3'
miRNA:   3'- -GGGGGUAUua--GACC-----AGCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 175398 0.66 0.943374
Target:  5'- cCCCCCAccUAcgagcaggccauggGUCUgugcccgacgacGGUuuccacgccacCGCCGCCACCa -3'
miRNA:   3'- -GGGGGU--AU--------------UAGA------------CCA-----------GCGGCGGUGGc -5'
1566 5' -57.3 NC_001347.2 + 174250 0.74 0.564219
Target:  5'- aCCUCCGc-GUC-GGUCGCCGCCuCCGc -3'
miRNA:   3'- -GGGGGUauUAGaCCAGCGGCGGuGGC- -5'
1566 5' -57.3 NC_001347.2 + 167954 0.66 0.94466
Target:  5'- -aCCgGgcuUCUGGUCGCCGUCGauaUCGg -3'
miRNA:   3'- ggGGgUauuAGACCAGCGGCGGU---GGC- -5'
1566 5' -57.3 NC_001347.2 + 156619 0.77 0.402474
Target:  5'- uCCCaCCAUGGUCgccgcUGGcggCGCCGCUGCCGg -3'
miRNA:   3'- -GGG-GGUAUUAG-----ACCa--GCGGCGGUGGC- -5'
1566 5' -57.3 NC_001347.2 + 155955 0.66 0.930928
Target:  5'- uUCUCCAUcagGAUCUGGU-GCagGCCACgCGg -3'
miRNA:   3'- -GGGGGUA---UUAGACCAgCGg-CGGUG-GC- -5'
1566 5' -57.3 NC_001347.2 + 154123 0.68 0.849269
Target:  5'- aCCCCCcg---CUGGU-GCCaCCGCCGu -3'
miRNA:   3'- -GGGGGuauuaGACCAgCGGcGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.