Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1566 | 5' | -57.3 | NC_001347.2 | + | 152721 | 0.67 | 0.920686 |
Target: 5'- aCgCUGUAGUCU--UCGCgCGCCGCCGu -3' miRNA: 3'- gGgGGUAUUAGAccAGCG-GCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 152517 | 0.66 | 0.935722 |
Target: 5'- cUCCUCGUAua--GGUUGuuGCCGCUGg -3' miRNA: 3'- -GGGGGUAUuagaCCAGCggCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 148073 | 0.67 | 0.915238 |
Target: 5'- uUCCCu--AUCUGGUgucCGCCGacgggaCCACCGu -3' miRNA: 3'- gGGGGuauUAGACCA---GCGGC------GGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 147925 | 0.74 | 0.535595 |
Target: 5'- gCCUCCGUGGUCgaaGG-CGuuGCCACCu -3' miRNA: 3'- -GGGGGUAUUAGa--CCaGCggCGGUGGc -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 143144 | 0.69 | 0.809278 |
Target: 5'- aCUCCAUGucUCUGGcCGgCGCCagACCGg -3' miRNA: 3'- gGGGGUAUu-AGACCaGCgGCGG--UGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 128120 | 0.7 | 0.765636 |
Target: 5'- gCCCgCGUugcccCUG-UCGCCGCCGCCa -3' miRNA: 3'- -GGGgGUAuua--GACcAGCGGCGGUGGc -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 116864 | 0.67 | 0.897603 |
Target: 5'- uCCCCCGUAGcccuccUCU--UCGCCGCCcgcgcGCCc -3' miRNA: 3'- -GGGGGUAUU------AGAccAGCGGCGG-----UGGc -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 116657 | 0.68 | 0.864053 |
Target: 5'- gCUgCAUGAgcacGG-CGCCGCCGCCGu -3' miRNA: 3'- gGGgGUAUUaga-CCaGCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 109817 | 0.7 | 0.792208 |
Target: 5'- -aCCCAaac----GUCGCCGCCACCGg -3' miRNA: 3'- ggGGGUauuagacCAGCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 102979 | 0.7 | 0.783472 |
Target: 5'- aCCgCA--AUCUGGUCGCCGUgCugCGu -3' miRNA: 3'- gGGgGUauUAGACCAGCGGCG-GugGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 101684 | 0.68 | 0.856754 |
Target: 5'- uUCCUCAcgcGUCUGGccgaaGCgGCCACCGa -3' miRNA: 3'- -GGGGGUau-UAGACCag---CGgCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 97586 | 0.68 | 0.88479 |
Target: 5'- aCCCggCCAaauaacguGUCUGGggccggUGCUGCCGCCGu -3' miRNA: 3'- -GGG--GGUau------UAGACCa-----GCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 93971 | 0.66 | 0.939851 |
Target: 5'- gCCCCgccgacgGUGAUUcgUGGUCGUgGCCaACUGg -3' miRNA: 3'- gGGGG-------UAUUAG--ACCAGCGgCGG-UGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 91059 | 0.67 | 0.897603 |
Target: 5'- gCCgCUCAUGGccuUCUGcg-GCCGCCACCGc -3' miRNA: 3'- -GG-GGGUAUU---AGACcagCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 90791 | 0.66 | 0.940299 |
Target: 5'- uCCUCCGUcGUCc--UCGCgGCCGCCa -3' miRNA: 3'- -GGGGGUAuUAGaccAGCGgCGGUGGc -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 88519 | 0.7 | 0.765636 |
Target: 5'- aCUCaggGUGGUCaaagUGGUgaCGCCGCCGCCGg -3' miRNA: 3'- gGGGg--UAUUAG----ACCA--GCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 88222 | 0.73 | 0.632242 |
Target: 5'- gCCgCUCAcgcuGUCcgaggGGUCGCUGCCGCCGg -3' miRNA: 3'- -GG-GGGUau--UAGa----CCAGCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 85318 | 0.69 | 0.809278 |
Target: 5'- gCCCCGcAGg-UGGUgaucagCGCCGCCGCCa -3' miRNA: 3'- gGGGGUaUUagACCA------GCGGCGGUGGc -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 82889 | 0.69 | 0.833767 |
Target: 5'- gCCCCCAUcgccucccgagcGAgcgGGcCGCCGCUAUCGc -3' miRNA: 3'- -GGGGGUA------------UUagaCCaGCGGCGGUGGC- -5' |
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1566 | 5' | -57.3 | NC_001347.2 | + | 80837 | 0.68 | 0.880786 |
Target: 5'- cCCUCgCGUGGUCcGcGUCGCCcacgccacuaccaccGCCGCCGc -3' miRNA: 3'- -GGGG-GUAUUAGaC-CAGCGG---------------CGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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