miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 193663 0.66 0.992527
Target:  5'- gUGGGCaagcGCCAcugGCACGcagguaauugaugCGCCGUCACg -3'
miRNA:   3'- gGCCUG----UGGU---UGUGCua-----------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 117827 0.66 0.993107
Target:  5'- gCCGucgagggcGACACCAGCGgGuUCACCuGUCGu -3'
miRNA:   3'- -GGC--------CUGUGGUUGUgCuAGUGG-CAGUg -5'
15662 3' -52.9 NC_004065.1 + 45845 0.66 0.99549
Target:  5'- aCCGGcCGCacggGACGCGAUgGCCGcUC-Cg -3'
miRNA:   3'- -GGCCuGUGg---UUGUGCUAgUGGC-AGuG- -5'
15662 3' -52.9 NC_004065.1 + 70089 0.66 0.99549
Target:  5'- gCGGACcCCGAgGCGAcgagcagCACCGgcaGCg -3'
miRNA:   3'- gGCCUGuGGUUgUGCUa------GUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 142911 0.66 0.993993
Target:  5'- cCUGGAcCACC-ACACGccgGCCGUCGa -3'
miRNA:   3'- -GGCCU-GUGGuUGUGCuagUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 70050 0.66 0.99549
Target:  5'- aCGGugGagaCGGcCACGAUCGCCG-CGa -3'
miRNA:   3'- gGCCugUg--GUU-GUGCUAGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 13456 0.66 0.99549
Target:  5'- gCGGAgAUaugGCAUGAUC-CCGUUACc -3'
miRNA:   3'- gGCCUgUGgu-UGUGCUAGuGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 229783 0.66 0.99549
Target:  5'- gCCGGACgaagGCCAACuCGuuaACCGagCACa -3'
miRNA:   3'- -GGCCUG----UGGUUGuGCuagUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 64308 0.66 0.99549
Target:  5'- cUCGGACAuCCAACAgGGUCugCu---- -3'
miRNA:   3'- -GGCCUGU-GGUUGUgCUAGugGcagug -5'
15662 3' -52.9 NC_004065.1 + 146545 0.66 0.99549
Target:  5'- gUCGGccuGC-CCGACAUcGUCGgCGUCGCg -3'
miRNA:   3'- -GGCC---UGuGGUUGUGcUAGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 130356 0.66 0.993993
Target:  5'- aCCGGACGCUgucGGCGCcg-CGCCGcCGg -3'
miRNA:   3'- -GGCCUGUGG---UUGUGcuaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 41983 0.66 0.99549
Target:  5'- aUCGGccCGCCGAUcaggAUGAUCACCGUg-- -3'
miRNA:   3'- -GGCCu-GUGGUUG----UGCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 199539 0.66 0.993107
Target:  5'- gCCGGGCGCCuccagccgGGCGCGcccCAUCGUgcCGCg -3'
miRNA:   3'- -GGCCUGUGG--------UUGUGCua-GUGGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 105030 0.66 0.993107
Target:  5'- uUCGGuCACCAACACGcGUCuguCCGg--- -3'
miRNA:   3'- -GGCCuGUGGUUGUGC-UAGu--GGCagug -5'
15662 3' -52.9 NC_004065.1 + 161470 0.66 0.993993
Target:  5'- uCCGGGC-CUu-CGgGA-CGCCGUCACc -3'
miRNA:   3'- -GGCCUGuGGuuGUgCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34695 0.66 0.992015
Target:  5'- gCGGGCGCCGcccaggaGCACGAagACCucgagcuucucGUUACa -3'
miRNA:   3'- gGCCUGUGGU-------UGUGCUagUGG-----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 139539 0.66 0.994785
Target:  5'- gUCGGACGCCAagACGCGAgcgaguauCCGagaaugCGCg -3'
miRNA:   3'- -GGCCUGUGGU--UGUGCUagu-----GGCa-----GUG- -5'
15662 3' -52.9 NC_004065.1 + 225374 0.66 0.99212
Target:  5'- uCUGGACGCCcGCGgCGGgggCGCUGgCGCu -3'
miRNA:   3'- -GGCCUGUGGuUGU-GCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 18292 0.66 0.993107
Target:  5'- -aGGACgaaaGCCGACACGA--GCCGgacUCGCc -3'
miRNA:   3'- ggCCUG----UGGUUGUGCUagUGGC---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 117338 0.66 0.993993
Target:  5'- gUGGACcCCGGCuuguCGGggucCGCCGUCAg -3'
miRNA:   3'- gGCCUGuGGUUGu---GCUa---GUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.