miRNA display CGI


Results 41 - 60 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 21996 0.66 0.994785
Target:  5'- aCGGccACGCCG--ACGGUCAUCGcCGCc -3'
miRNA:   3'- gGCC--UGUGGUugUGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 64308 0.66 0.99549
Target:  5'- cUCGGACAuCCAACAgGGUCugCu---- -3'
miRNA:   3'- -GGCCUGU-GGUUGUgCUAGugGcagug -5'
15662 3' -52.9 NC_004065.1 + 117338 0.66 0.993993
Target:  5'- gUGGACcCCGGCuuguCGGggucCGCCGUCAg -3'
miRNA:   3'- gGCCUGuGGUUGu---GCUa---GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 163380 0.66 0.993737
Target:  5'- gCCGGGCGCCcacCGCGccgaagccgacgauGUCGCCGagaGCg -3'
miRNA:   3'- -GGCCUGUGGuu-GUGC--------------UAGUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 169586 0.66 0.993909
Target:  5'- gUCGcGGCuCCGGC-CGGUUcgcggggGCCGUCACg -3'
miRNA:   3'- -GGC-CUGuGGUUGuGCUAG-------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 182964 0.66 0.99212
Target:  5'- -aGGcGCgACCAGCGuCGGU-ACCGUCGCa -3'
miRNA:   3'- ggCC-UG-UGGUUGU-GCUAgUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 8246 0.66 0.993909
Target:  5'- cCCGGcC-CCGACaacgcagACGAU-ACCGUCGCc -3'
miRNA:   3'- -GGCCuGuGGUUG-------UGCUAgUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 113558 0.66 0.993993
Target:  5'- uCCGGcGCGCgAGCgGCG-UCGCCcGUCAUg -3'
miRNA:   3'- -GGCC-UGUGgUUG-UGCuAGUGG-CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 75765 0.66 0.993993
Target:  5'- aCCaGGcACGCCAACGCuauUCACUG-CGCc -3'
miRNA:   3'- -GG-CC-UGUGGUUGUGcu-AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 41983 0.66 0.99549
Target:  5'- aUCGGccCGCCGAUcaggAUGAUCACCGUg-- -3'
miRNA:   3'- -GGCCu-GUGGUUG----UGCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 136110 0.66 0.993993
Target:  5'- aUCGGcccaACCGACACGA-CACCcaucgacgagGUCGCc -3'
miRNA:   3'- -GGCCug--UGGUUGUGCUaGUGG----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 42382 0.66 0.993737
Target:  5'- uCCGGcguguccccgucguGCGCCAAaACGGUCACguaCGUCGg -3'
miRNA:   3'- -GGCC--------------UGUGGUUgUGCUAGUG---GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 68840 0.66 0.993993
Target:  5'- gUCGG-CGCU--CugGAUCGCCGcCGCc -3'
miRNA:   3'- -GGCCuGUGGuuGugCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 112491 0.66 0.993993
Target:  5'- gCCGaGACAUCAu--CGGUCAccCCGUCGg -3'
miRNA:   3'- -GGC-CUGUGGUuguGCUAGU--GGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 82361 0.66 0.99212
Target:  5'- gCCGGGCG-CAGCugGAgaUCGacugcgaCGUCGCc -3'
miRNA:   3'- -GGCCUGUgGUUGugCU--AGUg------GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 55350 0.66 0.993013
Target:  5'- gCGGGCGCCAGgAUuAUuauuuaaCGCUGUCGCg -3'
miRNA:   3'- gGCCUGUGGUUgUGcUA-------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 147444 0.66 0.993993
Target:  5'- nUGGACGCCAACGaguUCugCGggaucCACg -3'
miRNA:   3'- gGCCUGUGGUUGUgcuAGugGCa----GUG- -5'
15662 3' -52.9 NC_004065.1 + 161470 0.66 0.993993
Target:  5'- uCCGGGC-CUu-CGgGA-CGCCGUCACc -3'
miRNA:   3'- -GGCCUGuGGuuGUgCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 142911 0.66 0.993993
Target:  5'- cCUGGAcCACC-ACACGccgGCCGUCGa -3'
miRNA:   3'- -GGCCU-GUGGuUGUGCuagUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 43638 0.66 0.993107
Target:  5'- aCGaacCACCAACGCagccucCGCCGUCGCa -3'
miRNA:   3'- gGCcu-GUGGUUGUGcua---GUGGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.