miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 124568 0.66 0.993107
Target:  5'- cCUGGuuCGCCGuCACGuucUCGuCCGUCGCc -3'
miRNA:   3'- -GGCCu-GUGGUuGUGCu--AGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 29996 0.66 0.993107
Target:  5'- gUGGuauCGCCAgaggcuGCGCGAccgUCACCGgCGCg -3'
miRNA:   3'- gGCCu--GUGGU------UGUGCU---AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 18292 0.66 0.993107
Target:  5'- -aGGACgaaaGCCGACACGA--GCCGgacUCGCc -3'
miRNA:   3'- ggCCUG----UGGUUGUGCUagUGGC---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 199539 0.66 0.993107
Target:  5'- gCCGGGCGCCuccagccgGGCGCGcccCAUCGUgcCGCg -3'
miRNA:   3'- -GGCCUGUGG--------UUGUGCua-GUGGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 117827 0.66 0.993107
Target:  5'- gCCGucgagggcGACACCAGCGgGuUCACCuGUCGu -3'
miRNA:   3'- -GGC--------CUGUGGUUGUgCuAGUGG-CAGUg -5'
15662 3' -52.9 NC_004065.1 + 105030 0.66 0.993107
Target:  5'- uUCGGuCACCAACACGcGUCuguCCGg--- -3'
miRNA:   3'- -GGCCuGUGGUUGUGC-UAGu--GGCagug -5'
15662 3' -52.9 NC_004065.1 + 163380 0.66 0.993737
Target:  5'- gCCGGGCGCCcacCGCGccgaagccgacgauGUCGCCGagaGCg -3'
miRNA:   3'- -GGCCUGUGGuu-GUGC--------------UAGUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 146599 0.66 0.993107
Target:  5'- cCCGGcaACGCCGucgacaccCugGA-CGCCGUCAg -3'
miRNA:   3'- -GGCC--UGUGGUu-------GugCUaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 101104 0.66 0.993107
Target:  5'- cCUGGACGCCGAacUGAUCuCCaUCAUg -3'
miRNA:   3'- -GGCCUGUGGUUguGCUAGuGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 111901 0.66 0.993107
Target:  5'- -aGGGCGCCAAgACGAU-GCUGagGCu -3'
miRNA:   3'- ggCCUGUGGUUgUGCUAgUGGCagUG- -5'
15662 3' -52.9 NC_004065.1 + 34695 0.66 0.992015
Target:  5'- gCGGGCGCCGcccaggaGCACGAagACCucgagcuucucGUUACa -3'
miRNA:   3'- gGCCUGUGGU-------UGUGCUagUGG-----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 225374 0.66 0.99212
Target:  5'- uCUGGACGCCcGCGgCGGgggCGCUGgCGCu -3'
miRNA:   3'- -GGCCUGUGGuUGU-GCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 110284 0.66 0.99212
Target:  5'- cCCGuGGUACUcGCGCGAcCcgGCCGUCACg -3'
miRNA:   3'- -GGC-CUGUGGuUGUGCUaG--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 100977 0.67 0.987607
Target:  5'- aCGGAaGCCGACACGAUggugggcuacucuucCACCG-CGa -3'
miRNA:   3'- gGCCUgUGGUUGUGCUA---------------GUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 211449 0.67 0.987003
Target:  5'- gCCGuGuCACCGcucCACGuuUCACCGUCGg -3'
miRNA:   3'- -GGC-CuGUGGUu--GUGCu-AGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 222198 0.67 0.988473
Target:  5'- aUGGuuGCgCGACACGAccccauUCACCGgCACg -3'
miRNA:   3'- gGCCugUG-GUUGUGCU------AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 118352 0.67 0.987003
Target:  5'- -aGaGACGCCAugGgCGc-CGCCGUCGCg -3'
miRNA:   3'- ggC-CUGUGGUugU-GCuaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 46262 0.67 0.986535
Target:  5'- aUCGGcagacccgaguucaACGCCGcCACGGcgcccaggUCGCCGUUACa -3'
miRNA:   3'- -GGCC--------------UGUGGUuGUGCU--------AGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 207894 0.67 0.987607
Target:  5'- gCCGGcCGCguGCGgcauggagcugucccUGGUCACCGUCGu -3'
miRNA:   3'- -GGCCuGUGguUGU---------------GCUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 174248 0.67 0.987003
Target:  5'- gCCGGAgCuCCuguucguCAUcGUCGCCGUCGCg -3'
miRNA:   3'- -GGCCU-GuGGuu-----GUGcUAGUGGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.