miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 162379 0.67 0.98981
Target:  5'- uUCGGACACCcGCuCGAcgcCACCGgCAUc -3'
miRNA:   3'- -GGCCUGUGGuUGuGCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 196031 0.67 0.98981
Target:  5'- cUCGGGcCACCAcgugcaugaGCGCGAgcCAUCGUCGg -3'
miRNA:   3'- -GGCCU-GUGGU---------UGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 46455 0.67 0.991475
Target:  5'- gCCaGGAgGCCGugACGAuguacuccaggaaccUCGCCGgcaUCACc -3'
miRNA:   3'- -GG-CCUgUGGUugUGCU---------------AGUGGC---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 110831 0.67 0.990907
Target:  5'- gCCaGGCACCAgugcgggGCGCGggCcgcccgcgucgaACCGUCGCc -3'
miRNA:   3'- -GGcCUGUGGU-------UGUGCuaG------------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 188580 0.67 0.991023
Target:  5'- -aGGACgcucuccacgGCCAGCACcccGUCucgguCCGUCACg -3'
miRNA:   3'- ggCCUG----------UGGUUGUGc--UAGu----GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 117017 0.67 0.991023
Target:  5'- aUCGGcACgAUCGGCagggggaucGCGAaCGCCGUCACg -3'
miRNA:   3'- -GGCC-UG-UGGUUG---------UGCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 216848 0.67 0.988332
Target:  5'- aCGGACGCCGcugUACGGuuucUCACCGguuugacggucguUCGCg -3'
miRNA:   3'- gGCCUGUGGUu--GUGCU----AGUGGC-------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 154172 0.67 0.987003
Target:  5'- gCGGcgGCugUuGCugGcUCGCCGUCGCc -3'
miRNA:   3'- gGCC--UGugGuUGugCuAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 74338 0.67 0.990907
Target:  5'- uUCGG-CACCGucgugcuGCGCGAgUCAuCCGUCGa -3'
miRNA:   3'- -GGCCuGUGGU-------UGUGCU-AGU-GGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 148963 0.67 0.991023
Target:  5'- uCCGGAC-CaAGCACcgGAUCGCCGUg-- -3'
miRNA:   3'- -GGCCUGuGgUUGUG--CUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 174248 0.67 0.987003
Target:  5'- gCCGGAgCuCCuguucguCAUcGUCGCCGUCGCg -3'
miRNA:   3'- -GGCCU-GuGGuu-----GUGcUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 164364 0.67 0.988473
Target:  5'- gCaGACGCCccgguCuCGGUUACCGUCGCc -3'
miRNA:   3'- gGcCUGUGGuu---GuGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34835 0.67 0.988473
Target:  5'- aCGGcguCGCgGagcGCACGGUCugCGUCGg -3'
miRNA:   3'- gGCCu--GUGgU---UGUGCUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 99661 0.67 0.98981
Target:  5'- cUCGGGCcCCuGCuGCGAgcgCACCuGUCGCu -3'
miRNA:   3'- -GGCCUGuGGuUG-UGCUa--GUGG-CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 151556 0.67 0.985223
Target:  5'- -aGGACACCGACGaccucugcCGcagcaacAUCAUCGUCAUc -3'
miRNA:   3'- ggCCUGUGGUUGU--------GC-------UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 123762 0.67 0.985392
Target:  5'- cUCGGuGCGCCGcGCGcCGGUCGCCuGUCGg -3'
miRNA:   3'- -GGCC-UGUGGU-UGU-GCUAGUGG-CAGUg -5'
15662 3' -52.9 NC_004065.1 + 153954 0.67 0.985392
Target:  5'- gCGGAgcCugCGACuuGucugCGCCGUCGCg -3'
miRNA:   3'- gGCCU--GugGUUGugCua--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 114541 0.67 0.985392
Target:  5'- cCCGGACGCCuaucggggggGAUACcAUCAuCCGgaUCGCg -3'
miRNA:   3'- -GGCCUGUGG----------UUGUGcUAGU-GGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 148405 0.67 0.986054
Target:  5'- cCUGGACGCCgAaguacgucucggccaGCAUGGUCGCCugggCGCg -3'
miRNA:   3'- -GGCCUGUGG-U---------------UGUGCUAGUGGca--GUG- -5'
15662 3' -52.9 NC_004065.1 + 78355 0.67 0.987003
Target:  5'- gUGGACcCCAGCu---UCACCGUCGa -3'
miRNA:   3'- gGCCUGuGGUUGugcuAGUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.