miRNA display CGI


Results 101 - 120 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 148963 0.67 0.991023
Target:  5'- uCCGGAC-CaAGCACcgGAUCGCCGUg-- -3'
miRNA:   3'- -GGCCUGuGgUUGUG--CUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 164364 0.67 0.988473
Target:  5'- gCaGACGCCccgguCuCGGUUACCGUCGCc -3'
miRNA:   3'- gGcCUGUGGuu---GuGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 207894 0.67 0.987607
Target:  5'- gCCGGcCGCguGCGgcauggagcugucccUGGUCACCGUCGu -3'
miRNA:   3'- -GGCCuGUGguUGU---------------GCUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 100977 0.67 0.987607
Target:  5'- aCGGAaGCCGACACGAUggugggcuacucuucCACCG-CGa -3'
miRNA:   3'- gGCCUgUGGUUGUGCUA---------------GUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 78355 0.67 0.987003
Target:  5'- gUGGACcCCAGCu---UCACCGUCGa -3'
miRNA:   3'- gGCCUGuGGUUGugcuAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 148405 0.67 0.986054
Target:  5'- cCUGGACGCCgAaguacgucucggccaGCAUGGUCGCCugggCGCg -3'
miRNA:   3'- -GGCCUGUGG-U---------------UGUGCUAGUGGca--GUG- -5'
15662 3' -52.9 NC_004065.1 + 114541 0.67 0.985392
Target:  5'- cCCGGACGCCuaucggggggGAUACcAUCAuCCGgaUCGCg -3'
miRNA:   3'- -GGCCUGUGG----------UUGUGcUAGU-GGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 153954 0.67 0.985392
Target:  5'- gCGGAgcCugCGACuuGucugCGCCGUCGCg -3'
miRNA:   3'- gGCCU--GugGUUGugCua--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 123762 0.67 0.985392
Target:  5'- cUCGGuGCGCCGcGCGcCGGUCGCCuGUCGg -3'
miRNA:   3'- -GGCC-UGUGGU-UGU-GCUAGUGG-CAGUg -5'
15662 3' -52.9 NC_004065.1 + 151556 0.67 0.985223
Target:  5'- -aGGACACCGACGaccucugcCGcagcaacAUCAUCGUCAUc -3'
miRNA:   3'- ggCCUGUGGUUGU--------GC-------UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 104422 0.67 0.985392
Target:  5'- uCCGG-CACCGAagcgGCGAccgaCACCGcCGCg -3'
miRNA:   3'- -GGCCuGUGGUUg---UGCUa---GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 168918 0.67 0.991023
Target:  5'- gCGGGCAagaaCGGCaacgagacgACGGUCGCCG-CGCc -3'
miRNA:   3'- gGCCUGUg---GUUG---------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 74338 0.67 0.990907
Target:  5'- uUCGG-CACCGucgugcuGCGCGAgUCAuCCGUCGa -3'
miRNA:   3'- -GGCCuGUGGU-------UGUGCU-AGU-GGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 99661 0.67 0.98981
Target:  5'- cUCGGGCcCCuGCuGCGAgcgCACCuGUCGCu -3'
miRNA:   3'- -GGCCUGuGGuUG-UGCUa--GUGG-CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34835 0.67 0.988473
Target:  5'- aCGGcguCGCgGagcGCACGGUCugCGUCGg -3'
miRNA:   3'- gGCCu--GUGgU---UGUGCUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 168822 0.67 0.988473
Target:  5'- gCCGaGACGCC--CGCuGUCGCCGcCGCc -3'
miRNA:   3'- -GGC-CUGUGGuuGUGcUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 118352 0.67 0.987003
Target:  5'- -aGaGACGCCAugGgCGc-CGCCGUCGCg -3'
miRNA:   3'- ggC-CUGUGGUugU-GCuaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 11775 0.68 0.977395
Target:  5'- uCCGu-CACCAccugACGuCGuuuAUCACCGUCACa -3'
miRNA:   3'- -GGCcuGUGGU----UGU-GC---UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 194439 0.68 0.976687
Target:  5'- cCCGGGCGCCucGgucgaagcgguuggGCACGGcggCGCCGcCGCu -3'
miRNA:   3'- -GGCCUGUGG--U--------------UGUGCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 50626 0.68 0.977395
Target:  5'- aCGGAgGCCAcCugGAUacaGCCGUUguACg -3'
miRNA:   3'- gGCCUgUGGUuGugCUAg--UGGCAG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.