miRNA display CGI


Results 21 - 40 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 32799 0.74 0.812253
Target:  5'- gCGGAUACCGccgGCGCGAcgggGCCGUCAUc -3'
miRNA:   3'- gGCCUGUGGU---UGUGCUag--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 49963 0.74 0.820734
Target:  5'- gCCGGGCAUCAugGagagGAcCGCCGUCAUc -3'
miRNA:   3'- -GGCCUGUGGUugUg---CUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 146833 0.74 0.785898
Target:  5'- gCCGGGCuCCGGCACGAgcggCACC-UUACc -3'
miRNA:   3'- -GGCCUGuGGUUGUGCUa---GUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 90695 0.74 0.820734
Target:  5'- gCUGGGCACgAACACGAUC-CgCGUCu- -3'
miRNA:   3'- -GGCCUGUGgUUGUGCUAGuG-GCAGug -5'
15662 3' -52.9 NC_004065.1 + 59707 0.74 0.794827
Target:  5'- -aGGGCGCCGagcggccgcggcGCACGGcgACCGUCGCg -3'
miRNA:   3'- ggCCUGUGGU------------UGUGCUagUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 115198 0.74 0.812253
Target:  5'- gCCGGcgGCGCCGACugaugAUGAUCACCGgcggugCGCu -3'
miRNA:   3'- -GGCC--UGUGGUUG-----UGCUAGUGGCa-----GUG- -5'
15662 3' -52.9 NC_004065.1 + 103314 0.73 0.837195
Target:  5'- gCCGGGCAUC-ACGCcGUUcaaACCGUCACu -3'
miRNA:   3'- -GGCCUGUGGuUGUGcUAG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 139592 0.73 0.860529
Target:  5'- -aGGugGCCGcgGCGAUCGCCGUUg- -3'
miRNA:   3'- ggCCugUGGUugUGCUAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 60951 0.73 0.837195
Target:  5'- aCGGGCG-CAGCGCcAUCACCGUCuCg -3'
miRNA:   3'- gGCCUGUgGUUGUGcUAGUGGCAGuG- -5'
15662 3' -52.9 NC_004065.1 + 188870 0.73 0.82905
Target:  5'- gCCGc-CGgCGACACGGUCGCCGUgACg -3'
miRNA:   3'- -GGCcuGUgGUUGUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 107585 0.73 0.852941
Target:  5'- -aGGACgaagaACUucuGCGCGAggcUCACCGUCACg -3'
miRNA:   3'- ggCCUG-----UGGu--UGUGCU---AGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 147408 0.73 0.837195
Target:  5'- cCCGGACGCaaccgcguccagCAGCACGA-CGgCGUCAUg -3'
miRNA:   3'- -GGCCUGUG------------GUUGUGCUaGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 67245 0.73 0.852941
Target:  5'- aCGGGCGCCGACugG-UCACgGcuugCGCg -3'
miRNA:   3'- gGCCUGUGGUUGugCuAGUGgCa---GUG- -5'
15662 3' -52.9 NC_004065.1 + 113983 0.72 0.884815
Target:  5'- uUCGGACucauacggccuccucGCCAGCACGGUCgacgACgGUUACa -3'
miRNA:   3'- -GGCCUG---------------UGGUUGUGCUAG----UGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 38483 0.72 0.888848
Target:  5'- -aGcGACACCAcUACGAacaCGCCGUCGCu -3'
miRNA:   3'- ggC-CUGUGGUuGUGCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 51515 0.72 0.867919
Target:  5'- gUCGuAgGCCAugACGA-CGCCGUCGCg -3'
miRNA:   3'- -GGCcUgUGGUugUGCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 9288 0.72 0.901723
Target:  5'- gUCGcacACGCCGAcCGCGAUCGCCGugUCGCu -3'
miRNA:   3'- -GGCc--UGUGGUU-GUGCUAGUGGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 24474 0.72 0.901723
Target:  5'- cUCGGACAUgGGCGCGuagauggCACCGcCGCc -3'
miRNA:   3'- -GGCCUGUGgUUGUGCua-----GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 202553 0.72 0.901723
Target:  5'- uCCGGG-ACCGugACGAUCggACCGUCc- -3'
miRNA:   3'- -GGCCUgUGGUugUGCUAG--UGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 77427 0.72 0.9011
Target:  5'- cCCGGGCGCUgcugacggacgacGACGCGGU-GCCGUaCACc -3'
miRNA:   3'- -GGCCUGUGG-------------UUGUGCUAgUGGCA-GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.