Results 61 - 80 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15662 | 3' | -52.9 | NC_004065.1 | + | 201819 | 0.71 | 0.907826 |
Target: 5'- gCCGGGCGuCCGcaGCuCGAUCACCGagUUGCg -3' miRNA: 3'- -GGCCUGU-GGU--UGuGCUAGUGGC--AGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 17663 | 0.71 | 0.919353 |
Target: 5'- gUCGGAUGaCGACcgACGGUCGuCCGUCGCg -3' miRNA: 3'- -GGCCUGUgGUUG--UGCUAGU-GGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 109910 | 0.71 | 0.919353 |
Target: 5'- cCCGGcuCGuCCGcCGCGGcCGCCGUCGCg -3' miRNA: 3'- -GGCCu-GU-GGUuGUGCUaGUGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 206540 | 0.71 | 0.919353 |
Target: 5'- gCGGACGCgAAUcggacucgGCGucGUCAUCGUCGCg -3' miRNA: 3'- gGCCUGUGgUUG--------UGC--UAGUGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 110671 | 0.71 | 0.929965 |
Target: 5'- -aGGACGCCGGCgGCGGaggagaCGCCGUCGg -3' miRNA: 3'- ggCCUGUGGUUG-UGCUa-----GUGGCAGUg -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 19025 | 0.71 | 0.928432 |
Target: 5'- cUCGGACGCCAAgACGAacgucucguuuucgUCguccccgcuACUGUCACu -3' miRNA: 3'- -GGCCUGUGGUUgUGCU--------------AG---------UGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 151694 | 0.71 | 0.929965 |
Target: 5'- gCGGGCGCCcuGCAUcGUCugCGUCGg -3' miRNA: 3'- gGCCUGUGGu-UGUGcUAGugGCAGUg -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 116687 | 0.7 | 0.954061 |
Target: 5'- gUCGaACACCAGCugGAUCcucagcuuguggugcGCCGUCuCg -3' miRNA: 3'- -GGCcUGUGGUUGugCUAG---------------UGGCAGuG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 107952 | 0.7 | 0.939659 |
Target: 5'- gCgGGGCACCugguaGACGCGGUaGCCGUCc- -3' miRNA: 3'- -GgCCUGUGG-----UUGUGCUAgUGGCAGug -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 174898 | 0.7 | 0.939659 |
Target: 5'- cUCGGACugUAAUACGAaccuacucCACCGUuCACc -3' miRNA: 3'- -GGCCUGugGUUGUGCUa-------GUGGCA-GUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 34368 | 0.7 | 0.943724 |
Target: 5'- gCGGACucguucuGCCGGCGCuuuAUCGCCGaUCACc -3' miRNA: 3'- gGCCUG-------UGGUUGUGc--UAGUGGC-AGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 76924 | 0.7 | 0.944164 |
Target: 5'- aCGGcgGCGCCGACGCGAUCcguuucgaGCCGaUGCu -3' miRNA: 3'- gGCC--UGUGGUUGUGCUAG--------UGGCaGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 142889 | 0.7 | 0.948444 |
Target: 5'- cCUGaGCACCuGCGCGAUCGCgGauUCGCa -3' miRNA: 3'- -GGCcUGUGGuUGUGCUAGUGgC--AGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 190484 | 0.7 | 0.948444 |
Target: 5'- -aGGAC-CCGGCGgGccgcucGUCACUGUCACa -3' miRNA: 3'- ggCCUGuGGUUGUgC------UAGUGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 109525 | 0.7 | 0.939659 |
Target: 5'- cCCaGGACACUGcugcCGCGAgucgUCAUCGUCACc -3' miRNA: 3'- -GG-CCUGUGGUu---GUGCU----AGUGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 77060 | 0.7 | 0.934927 |
Target: 5'- gCCGcGACGgCGAUgaacggugauaGCGuUCGCCGUCGCg -3' miRNA: 3'- -GGC-CUGUgGUUG-----------UGCuAGUGGCAGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 147258 | 0.7 | 0.948444 |
Target: 5'- aCCGGACGCCuGCucucCGAg-GCCGUCu- -3' miRNA: 3'- -GGCCUGUGGuUGu---GCUagUGGCAGug -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 122480 | 0.7 | 0.939659 |
Target: 5'- cCCGGuaGCGCaCGACccgcagcuggGCGGUCGCCG-CGCg -3' miRNA: 3'- -GGCC--UGUG-GUUG----------UGCUAGUGGCaGUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 110506 | 0.7 | 0.939659 |
Target: 5'- cCCGGACAaggaugUCGACAgGcUCGCCGcgCACg -3' miRNA: 3'- -GGCCUGU------GGUUGUgCuAGUGGCa-GUG- -5' |
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15662 | 3' | -52.9 | NC_004065.1 | + | 59887 | 0.7 | 0.952105 |
Target: 5'- gCUGGACcgugucgACCGACGCGGUCAUcaagaugugCGUCGa -3' miRNA: 3'- -GGCCUG-------UGGUUGUGCUAGUG---------GCAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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