miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 229546 0.71 0.924774
Target:  5'- gCCGGugACgCAACGCGAcCAgCGUgcCGCg -3'
miRNA:   3'- -GGCCugUG-GUUGUGCUaGUgGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 67643 0.71 0.924774
Target:  5'- cCCGGACAUCGACGCG-UCGgugaUGUCGg -3'
miRNA:   3'- -GGCCUGUGGUUGUGCuAGUg---GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 19025 0.71 0.928432
Target:  5'- cUCGGACGCCAAgACGAacgucucguuuucgUCguccccgcuACUGUCACu -3'
miRNA:   3'- -GGCCUGUGGUUgUGCU--------------AG---------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 35144 0.71 0.929965
Target:  5'- gCCGGuguACACC-GCGaucaGAUCGCCGUgACu -3'
miRNA:   3'- -GGCC---UGUGGuUGUg---CUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 151694 0.71 0.929965
Target:  5'- gCGGGCGCCcuGCAUcGUCugCGUCGg -3'
miRNA:   3'- gGCCUGUGGu-UGUGcUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 115149 0.71 0.929965
Target:  5'- cUCGGAacCGCCGGCcgGCGG-CACCGUCGu -3'
miRNA:   3'- -GGCCU--GUGGUUG--UGCUaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 110671 0.71 0.929965
Target:  5'- -aGGACGCCGGCgGCGGaggagaCGCCGUCGg -3'
miRNA:   3'- ggCCUGUGGUUG-UGCUa-----GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 77060 0.7 0.934927
Target:  5'- gCCGcGACGgCGAUgaacggugauaGCGuUCGCCGUCGCg -3'
miRNA:   3'- -GGC-CUGUgGUUG-----------UGCuAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 107952 0.7 0.939659
Target:  5'- gCgGGGCACCugguaGACGCGGUaGCCGUCc- -3'
miRNA:   3'- -GgCCUGUGG-----UUGUGCUAgUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 174898 0.7 0.939659
Target:  5'- cUCGGACugUAAUACGAaccuacucCACCGUuCACc -3'
miRNA:   3'- -GGCCUGugGUUGUGCUa-------GUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 110506 0.7 0.939659
Target:  5'- cCCGGACAaggaugUCGACAgGcUCGCCGcgCACg -3'
miRNA:   3'- -GGCCUGU------GGUUGUgCuAGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 109525 0.7 0.939659
Target:  5'- cCCaGGACACUGcugcCGCGAgucgUCAUCGUCACc -3'
miRNA:   3'- -GG-CCUGUGGUu---GUGCU----AGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 122480 0.7 0.939659
Target:  5'- cCCGGuaGCGCaCGACccgcagcuggGCGGUCGCCG-CGCg -3'
miRNA:   3'- -GGCC--UGUG-GUUG----------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 34368 0.7 0.943724
Target:  5'- gCGGACucguucuGCCGGCGCuuuAUCGCCGaUCACc -3'
miRNA:   3'- gGCCUG-------UGGUUGUGc--UAGUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 76924 0.7 0.944164
Target:  5'- aCGGcgGCGCCGACGCGAUCcguuucgaGCCGaUGCu -3'
miRNA:   3'- gGCC--UGUGGUUGUGCUAG--------UGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 190484 0.7 0.948444
Target:  5'- -aGGAC-CCGGCGgGccgcucGUCACUGUCACa -3'
miRNA:   3'- ggCCUGuGGUUGUgC------UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 142889 0.7 0.948444
Target:  5'- cCUGaGCACCuGCGCGAUCGCgGauUCGCa -3'
miRNA:   3'- -GGCcUGUGGuUGUGCUAGUGgC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 147258 0.7 0.948444
Target:  5'- aCCGGACGCCuGCucucCGAg-GCCGUCu- -3'
miRNA:   3'- -GGCCUGUGGuUGu---GCUagUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 59887 0.7 0.952105
Target:  5'- gCUGGACcgugucgACCGACGCGGUCAUcaagaugugCGUCGa -3'
miRNA:   3'- -GGCCUG-------UGGUUGUGCUAGUG---------GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 145808 0.7 0.9525
Target:  5'- uCUGGuCA-CGACGCGAUCuCCGUCGg -3'
miRNA:   3'- -GGCCuGUgGUUGUGCUAGuGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.