miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 116687 0.7 0.954061
Target:  5'- gUCGaACACCAGCugGAUCcucagcuuguggugcGCCGUCuCg -3'
miRNA:   3'- -GGCcUGUGGUUGugCUAG---------------UGGCAGuG- -5'
15662 3' -52.9 NC_004065.1 + 136865 0.69 0.956336
Target:  5'- aCGGAUGCC---GCGGUCAgCGUCAg -3'
miRNA:   3'- gGCCUGUGGuugUGCUAGUgGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 190816 0.69 0.956336
Target:  5'- gUGGugauCugCGACGCGA-CACCGUgCGCg -3'
miRNA:   3'- gGCCu---GugGUUGUGCUaGUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 42106 0.69 0.959956
Target:  5'- -aGGaACGgCAGCAUcGUCACCGUCAa -3'
miRNA:   3'- ggCC-UGUgGUUGUGcUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 124252 0.69 0.959956
Target:  5'- aUGGGCGaCAGCGgGAagcCGCCGUCGCa -3'
miRNA:   3'- gGCCUGUgGUUGUgCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 103455 0.69 0.959956
Target:  5'- gCGGAC-CCGAgcugauguuCACGAUCugCG-CGCg -3'
miRNA:   3'- gGCCUGuGGUU---------GUGCUAGugGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 195378 0.69 0.959956
Target:  5'- cCUGGACACCGugACGGccgaggUCuuccacggcgaGCCGUaCACg -3'
miRNA:   3'- -GGCCUGUGGUugUGCU------AG-----------UGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 42668 0.69 0.959956
Target:  5'- uCgGGACGCUGACGCGAa-GCUGcUCGCg -3'
miRNA:   3'- -GgCCUGUGGUUGUGCUagUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 223496 0.69 0.963363
Target:  5'- cUCGGG-ACCAGCA-GAUCGCCGgUCAg -3'
miRNA:   3'- -GGCCUgUGGUUGUgCUAGUGGC-AGUg -5'
15662 3' -52.9 NC_004065.1 + 99935 0.69 0.963363
Target:  5'- gCGGGCGCCGA-ACGGcaUCGCCGUa-- -3'
miRNA:   3'- gGCCUGUGGUUgUGCU--AGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 64262 0.69 0.963363
Target:  5'- aCGGACGCgGGagGCcGUCACCGUCuGCa -3'
miRNA:   3'- gGCCUGUGgUUg-UGcUAGUGGCAG-UG- -5'
15662 3' -52.9 NC_004065.1 + 68411 0.69 0.963363
Target:  5'- gCGcGCGCCGcCGCGAUCACCG-CGu -3'
miRNA:   3'- gGCcUGUGGUuGUGCUAGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 48060 0.69 0.966563
Target:  5'- aCGGACACCcuGCGCuGAagaaccacuUCACCcUCGCg -3'
miRNA:   3'- gGCCUGUGGu-UGUG-CU---------AGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 143029 0.69 0.966563
Target:  5'- cCCGGcgccacCACCAGCAgGccGUCGUCGUCGCg -3'
miRNA:   3'- -GGCCu-----GUGGUUGUgC--UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 113285 0.69 0.969269
Target:  5'- gCGGAucgucuuCACCAugACGGgcgaCGCCGcUCGCg -3'
miRNA:   3'- gGCCU-------GUGGUugUGCUa---GUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 103508 0.69 0.96956
Target:  5'- gCCGGACACCugugugaagagGACGCGAgcagcugccuggUCAUCccguGUCGCc -3'
miRNA:   3'- -GGCCUGUGG-----------UUGUGCU------------AGUGG----CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 197114 0.69 0.96956
Target:  5'- uUCGGACugCuGCacuGCGAgacgcugUACCGUCGCc -3'
miRNA:   3'- -GGCCUGugGuUG---UGCUa------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 38127 0.69 0.96956
Target:  5'- gCGGaACAUCGuGC-CGAUCaccGCCGUCGCg -3'
miRNA:   3'- gGCC-UGUGGU-UGuGCUAG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 85519 0.69 0.96956
Target:  5'- uCCGGuCGCCGcGCcCGAagUCGCCGUCu- -3'
miRNA:   3'- -GGCCuGUGGU-UGuGCU--AGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 191579 0.69 0.96956
Target:  5'- gCGGugAUCGgcGCGCGAaaACCGUCGu -3'
miRNA:   3'- gGCCugUGGU--UGUGCUagUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.