miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 149716 0.66 0.993013
Target:  5'- gCGGccGCGCCGGCccucggacucauaGCGGUCcaGCgCGUCGCg -3'
miRNA:   3'- gGCC--UGUGGUUG-------------UGCUAG--UG-GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 55350 0.66 0.993013
Target:  5'- gCGGGCGCCAGgAUuAUuauuuaaCGCUGUCGCg -3'
miRNA:   3'- gGCCUGUGGUUgUGcUA-------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 119192 0.66 0.992527
Target:  5'- gUGGAUGCCgAACagcaaccugucguucACGAUCACCGgCAUg -3'
miRNA:   3'- gGCCUGUGG-UUG---------------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 193663 0.66 0.992527
Target:  5'- gUGGGCaagcGCCAcugGCACGcagguaauugaugCGCCGUCACg -3'
miRNA:   3'- gGCCUG----UGGU---UGUGCua-----------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 225374 0.66 0.99212
Target:  5'- uCUGGACGCCcGCGgCGGgggCGCUGgCGCu -3'
miRNA:   3'- -GGCCUGUGGuUGU-GCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 110284 0.66 0.99212
Target:  5'- cCCGuGGUACUcGCGCGAcCcgGCCGUCACg -3'
miRNA:   3'- -GGC-CUGUGGuUGUGCUaG--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 149065 0.66 0.99212
Target:  5'- gCGGcAgGCCGAuCGgGGUCGUCGUCACg -3'
miRNA:   3'- gGCC-UgUGGUU-GUgCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 82361 0.66 0.99212
Target:  5'- gCCGGGCG-CAGCugGAgaUCGacugcgaCGUCGCc -3'
miRNA:   3'- -GGCCUGUgGUUGugCU--AGUg------GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 66071 0.66 0.99212
Target:  5'- gCCGG-CAUCGcguuCACGAUCGCC-UCGa -3'
miRNA:   3'- -GGCCuGUGGUu---GUGCUAGUGGcAGUg -5'
15662 3' -52.9 NC_004065.1 + 131569 0.66 0.99212
Target:  5'- -gGGACGcCCAGCuucuCGAccaccuugaCGCCGUCGCu -3'
miRNA:   3'- ggCCUGU-GGUUGu---GCUa--------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 182964 0.66 0.99212
Target:  5'- -aGGcGCgACCAGCGuCGGU-ACCGUCGCa -3'
miRNA:   3'- ggCC-UG-UGGUUGU-GCUAgUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 27389 0.66 0.99212
Target:  5'- cUCGGAC-CCGGCucguCGuuGUCAUCGUCGu -3'
miRNA:   3'- -GGCCUGuGGUUGu---GC--UAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 34695 0.66 0.992015
Target:  5'- gCGGGCGCCGcccaggaGCACGAagACCucgagcuucucGUUACa -3'
miRNA:   3'- gGCCUGUGGU-------UGUGCUagUGG-----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 46455 0.67 0.991475
Target:  5'- gCCaGGAgGCCGugACGAuguacuccaggaaccUCGCCGgcaUCACc -3'
miRNA:   3'- -GG-CCUgUGGUugUGCU---------------AGUGGC---AGUG- -5'
15662 3' -52.9 NC_004065.1 + 168918 0.67 0.991023
Target:  5'- gCGGGCAagaaCGGCaacgagacgACGGUCGCCG-CGCc -3'
miRNA:   3'- gGCCUGUg---GUUG---------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 22867 0.67 0.991023
Target:  5'- aUCGGAUACCuguCAUGAaaaccccuUUACCGggCACg -3'
miRNA:   3'- -GGCCUGUGGuu-GUGCU--------AGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 117017 0.67 0.991023
Target:  5'- aUCGGcACgAUCGGCagggggaucGCGAaCGCCGUCACg -3'
miRNA:   3'- -GGCC-UG-UGGUUG---------UGCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 188580 0.67 0.991023
Target:  5'- -aGGACgcucuccacgGCCAGCACcccGUCucgguCCGUCACg -3'
miRNA:   3'- ggCCUG----------UGGUUGUGc--UAGu----GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 148963 0.67 0.991023
Target:  5'- uCCGGAC-CaAGCACcgGAUCGCCGUg-- -3'
miRNA:   3'- -GGCCUGuGgUUGUG--CUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 74338 0.67 0.990907
Target:  5'- uUCGG-CACCGucgugcuGCGCGAgUCAuCCGUCGa -3'
miRNA:   3'- -GGCCuGUGGU-------UGUGCU-AGU-GGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.