miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 31940 0.68 0.983634
Target:  5'- cUCGGGCACCGACGC----ACCuUCGCu -3'
miRNA:   3'- -GGCCUGUGGUUGUGcuagUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 32278 0.71 0.906019
Target:  5'- aCgGGACACUgcgcgauggccucgGAgGCGGUCGCgGUCGCc -3'
miRNA:   3'- -GgCCUGUGG--------------UUgUGCUAGUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 32799 0.74 0.812253
Target:  5'- gCGGAUACCGccgGCGCGAcgggGCCGUCAUc -3'
miRNA:   3'- gGCCUGUGGU---UGUGCUag--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34250 0.68 0.983634
Target:  5'- gCGGucCGCCAuggucagcgcgACACGG-CGCCGUCGa -3'
miRNA:   3'- gGCCu-GUGGU-----------UGUGCUaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 34368 0.7 0.943724
Target:  5'- gCGGACucguucuGCCGGCGCuuuAUCGCCGaUCACc -3'
miRNA:   3'- gGCCUG-------UGGUUGUGc--UAGUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 34695 0.66 0.992015
Target:  5'- gCGGGCGCCGcccaggaGCACGAagACCucgagcuucucGUUACa -3'
miRNA:   3'- gGCCUGUGGU-------UGUGCUagUGG-----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34835 0.67 0.988473
Target:  5'- aCGGcguCGCgGagcGCACGGUCugCGUCGg -3'
miRNA:   3'- gGCCu--GUGgU---UGUGCUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 35144 0.71 0.929965
Target:  5'- gCCGGuguACACC-GCGaucaGAUCGCCGUgACu -3'
miRNA:   3'- -GGCC---UGUGGuUGUg---CUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 37724 0.66 0.993993
Target:  5'- cCCGGACACgcgcgugaAGCugGAUCgcACCGagagacggCACg -3'
miRNA:   3'- -GGCCUGUGg-------UUGugCUAG--UGGCa-------GUG- -5'
15662 3' -52.9 NC_004065.1 + 37875 0.68 0.972361
Target:  5'- gCGGugAUCGGCACGAUguuCCG-CACc -3'
miRNA:   3'- gGCCugUGGUUGUGCUAgu-GGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 38127 0.69 0.96956
Target:  5'- gCGGaACAUCGuGC-CGAUCaccGCCGUCGCg -3'
miRNA:   3'- gGCC-UGUGGU-UGuGCUAG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 38483 0.72 0.888848
Target:  5'- -aGcGACACCAcUACGAacaCGCCGUCGCu -3'
miRNA:   3'- ggC-CUGUGGUuGUGCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 41983 0.66 0.99549
Target:  5'- aUCGGccCGCCGAUcaggAUGAUCACCGUg-- -3'
miRNA:   3'- -GGCCu-GUGGUUG----UGCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 42106 0.69 0.959956
Target:  5'- -aGGaACGgCAGCAUcGUCACCGUCAa -3'
miRNA:   3'- ggCC-UGUgGUUGUGcUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 42382 0.66 0.993737
Target:  5'- uCCGGcguguccccgucguGCGCCAAaACGGUCACguaCGUCGg -3'
miRNA:   3'- -GGCC--------------UGUGGUUgUGCUAGUG---GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 42668 0.69 0.959956
Target:  5'- uCgGGACGCUGACGCGAa-GCUGcUCGCg -3'
miRNA:   3'- -GgCCUGUGGUUGUGCUagUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 43638 0.66 0.993107
Target:  5'- aCGaacCACCAACGCagccucCGCCGUCGCa -3'
miRNA:   3'- gGCcu-GUGGUUGUGcua---GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 44159 0.68 0.97497
Target:  5'- gCGGcGCAUCGACGCGAUCuCCGa--- -3'
miRNA:   3'- gGCC-UGUGGUUGUGCUAGuGGCagug -5'
15662 3' -52.9 NC_004065.1 + 44842 0.76 0.700595
Target:  5'- aCGGACAgCGACACGGgccggagCAgCGUCGCc -3'
miRNA:   3'- gGCCUGUgGUUGUGCUa------GUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 45845 0.66 0.99549
Target:  5'- aCCGGcCGCacggGACGCGAUgGCCGcUC-Cg -3'
miRNA:   3'- -GGCCuGUGg---UUGUGCUAgUGGC-AGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.