miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 61587 0.68 0.97497
Target:  5'- cCCGGGuCGCCGcgGCucUCGCCGUCGa -3'
miRNA:   3'- -GGCCU-GUGGUugUGcuAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 61722 0.68 0.972361
Target:  5'- gUGGACGCCAugGCGcagCGCa-UCACg -3'
miRNA:   3'- gGCCUGUGGUugUGCua-GUGgcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 63969 0.66 0.99549
Target:  5'- aCGG-CGCCGACcaccagGCGAUCACgGccCGCu -3'
miRNA:   3'- gGCCuGUGGUUG------UGCUAGUGgCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 64262 0.69 0.963363
Target:  5'- aCGGACGCgGGagGCcGUCACCGUCuGCa -3'
miRNA:   3'- gGCCUGUGgUUg-UGcUAGUGGCAG-UG- -5'
15662 3' -52.9 NC_004065.1 + 64308 0.66 0.99549
Target:  5'- cUCGGACAuCCAACAgGGUCugCu---- -3'
miRNA:   3'- -GGCCUGU-GGUUGUgCUAGugGcagug -5'
15662 3' -52.9 NC_004065.1 + 66071 0.66 0.99212
Target:  5'- gCCGG-CAUCGcguuCACGAUCGCC-UCGa -3'
miRNA:   3'- -GGCCuGUGGUu---GUGCUAGUGGcAGUg -5'
15662 3' -52.9 NC_004065.1 + 67115 0.67 0.98981
Target:  5'- gCUGGACGCCGuGCugGA-CAgCGgcgCGCg -3'
miRNA:   3'- -GGCCUGUGGU-UGugCUaGUgGCa--GUG- -5'
15662 3' -52.9 NC_004065.1 + 67245 0.73 0.852941
Target:  5'- aCGGGCGCCGACugG-UCACgGcuugCGCg -3'
miRNA:   3'- gGCCUGUGGUUGugCuAGUGgCa---GUG- -5'
15662 3' -52.9 NC_004065.1 + 67364 0.68 0.972361
Target:  5'- gCCGGuguacauCAUCGugACGGUCGgCGUgCACa -3'
miRNA:   3'- -GGCCu------GUGGUugUGCUAGUgGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 67485 0.67 0.985223
Target:  5'- cCCGuGAUACCcGCGggcgucuCGAUCACCGUgGg -3'
miRNA:   3'- -GGC-CUGUGGuUGU-------GCUAGUGGCAgUg -5'
15662 3' -52.9 NC_004065.1 + 67643 0.71 0.924774
Target:  5'- cCCGGACAUCGACGCG-UCGgugaUGUCGg -3'
miRNA:   3'- -GGCCUGUGGUUGUGCuAGUg---GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 68023 0.67 0.985392
Target:  5'- uCUGGGCGCCcGCGCcGUucgucaCGCCGUCGg -3'
miRNA:   3'- -GGCCUGUGGuUGUGcUA------GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 68411 0.69 0.963363
Target:  5'- gCGcGCGCCGcCGCGAUCACCG-CGu -3'
miRNA:   3'- gGCcUGUGGUuGUGCUAGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 68840 0.66 0.993993
Target:  5'- gUCGG-CGCU--CugGAUCGCCGcCGCc -3'
miRNA:   3'- -GGCCuGUGGuuGugCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 69371 0.66 0.993107
Target:  5'- gUCGGcGCGCC-GCGCGuccugcucGUcCACCGUCAUg -3'
miRNA:   3'- -GGCC-UGUGGuUGUGC--------UA-GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 69710 0.72 0.901723
Target:  5'- gCCGGcgcgacauCugCGACACGAUguCCGUCGa -3'
miRNA:   3'- -GGCCu-------GugGUUGUGCUAguGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 69868 0.66 0.995423
Target:  5'- gCGGucguauuccaccuGCACCcg-GCGGUaCACCGUCGCc -3'
miRNA:   3'- gGCC-------------UGUGGuugUGCUA-GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 70050 0.66 0.99549
Target:  5'- aCGGugGagaCGGcCACGAUCGCCG-CGa -3'
miRNA:   3'- gGCCugUg--GUU-GUGCUAGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 70089 0.66 0.99549
Target:  5'- gCGGACcCCGAgGCGAcgagcagCACCGgcaGCg -3'
miRNA:   3'- gGCCUGuGGUUgUGCUa------GUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 70970 0.68 0.979643
Target:  5'- aCGG-CGCCGgagcACACGAgggaaUCGCUGUCGa -3'
miRNA:   3'- gGCCuGUGGU----UGUGCU-----AGUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.