miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 71761 0.75 0.729838
Target:  5'- gUCGGugACCGuguugGCGuCGAUCGCCGcCACu -3'
miRNA:   3'- -GGCCugUGGU-----UGU-GCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 72011 0.79 0.525917
Target:  5'- --cGACGCCAACACGGUCACCGaccgguagcgccgcgUCACc -3'
miRNA:   3'- ggcCUGUGGUUGUGCUAGUGGC---------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 72733 0.66 0.994785
Target:  5'- cCCGGucuucagccGCGCCGACACcgucUCGCuCGUCGu -3'
miRNA:   3'- -GGCC---------UGUGGUUGUGcu--AGUG-GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 74338 0.67 0.990907
Target:  5'- uUCGG-CACCGucgugcuGCGCGAgUCAuCCGUCGa -3'
miRNA:   3'- -GGCCuGUGGU-------UGUGCU-AGU-GGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 74660 0.68 0.983634
Target:  5'- uCCGGAC-CgCGGCGCGucCGCCGUagCGCa -3'
miRNA:   3'- -GGCCUGuG-GUUGUGCuaGUGGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 75321 0.72 0.875106
Target:  5'- -aGGACGCaguaGACGCGG-CGuCCGUCGCg -3'
miRNA:   3'- ggCCUGUGg---UUGUGCUaGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 75765 0.66 0.993993
Target:  5'- aCCaGGcACGCCAACGCuauUCACUG-CGCc -3'
miRNA:   3'- -GG-CC-UGUGGUUGUGcu-AGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 76796 0.68 0.98172
Target:  5'- aCGGcgaACGCUAuCACcguucAUCGCCGUCGCg -3'
miRNA:   3'- gGCC---UGUGGUuGUGc----UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 76924 0.7 0.944164
Target:  5'- aCGGcgGCGCCGACGCGAUCcguuucgaGCCGaUGCu -3'
miRNA:   3'- gGCC--UGUGGUUGUGCUAG--------UGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 77060 0.7 0.934927
Target:  5'- gCCGcGACGgCGAUgaacggugauaGCGuUCGCCGUCGCg -3'
miRNA:   3'- -GGC-CUGUgGUUG-----------UGCuAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 77427 0.72 0.9011
Target:  5'- cCCGGGCGCUgcugacggacgacGACGCGGU-GCCGUaCACc -3'
miRNA:   3'- -GGCCUGUGG-------------UUGUGCUAgUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 77481 0.66 0.993107
Target:  5'- cUCGGugGCC---ACGAUCAgCGUgGCc -3'
miRNA:   3'- -GGCCugUGGuugUGCUAGUgGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 77870 0.71 0.907226
Target:  5'- aCCGGACgcagcugACCAugGCGGagaUC-CUGUCGCa -3'
miRNA:   3'- -GGCCUG-------UGGUugUGCU---AGuGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 78355 0.67 0.987003
Target:  5'- gUGGACcCCAGCu---UCACCGUCGa -3'
miRNA:   3'- gGCCUGuGGUUGugcuAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 79957 0.75 0.774094
Target:  5'- gUCGGGCAgggugaggacguacUCGACACGGUCGCCGacCGCg -3'
miRNA:   3'- -GGCCUGU--------------GGUUGUGCUAGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 80078 0.67 0.985392
Target:  5'- gCCGu-CACCAACACGcUCAugcCCGUCu- -3'
miRNA:   3'- -GGCcuGUGGUUGUGCuAGU---GGCAGug -5'
15662 3' -52.9 NC_004065.1 + 82361 0.66 0.99212
Target:  5'- gCCGGGCG-CAGCugGAgaUCGacugcgaCGUCGCc -3'
miRNA:   3'- -GGCCUGUgGUUGugCU--AGUg------GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 85519 0.69 0.96956
Target:  5'- uCCGGuCGCCGcGCcCGAagUCGCCGUCu- -3'
miRNA:   3'- -GGCCuGUGGU-UGuGCU--AGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 85604 0.68 0.98172
Target:  5'- cCUGGuguacuCGCCGcCGCGAUUACC-UCACu -3'
miRNA:   3'- -GGCCu-----GUGGUuGUGCUAGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 90363 0.66 0.99549
Target:  5'- gCCGGcgGCGCCAGCGgGuugaacuucGUCuCCGUCGa -3'
miRNA:   3'- -GGCC--UGUGGUUGUgC---------UAGuGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.