miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 206540 0.71 0.919353
Target:  5'- gCGGACGCgAAUcggacucgGCGucGUCAUCGUCGCg -3'
miRNA:   3'- gGCCUGUGgUUG--------UGC--UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 202829 0.72 0.895396
Target:  5'- gUCGGACGCCuggucgaacgGGgACGGUCcgAUCGUCACg -3'
miRNA:   3'- -GGCCUGUGG----------UUgUGCUAG--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 202553 0.72 0.901723
Target:  5'- uCCGGG-ACCGugACGAUCggACCGUCc- -3'
miRNA:   3'- -GGCCUgUGGUugUGCUAG--UGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 201819 0.71 0.907826
Target:  5'- gCCGGGCGuCCGcaGCuCGAUCACCGagUUGCg -3'
miRNA:   3'- -GGCCUGU-GGU--UGuGCUAGUGGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 201147 0.71 0.907826
Target:  5'- uCgGGGCGCCAGCA--GUCcUCGUCACg -3'
miRNA:   3'- -GgCCUGUGGUUGUgcUAGuGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 199539 0.66 0.993107
Target:  5'- gCCGGGCGCCuccagccgGGCGCGcccCAUCGUgcCGCg -3'
miRNA:   3'- -GGCCUGUGG--------UUGUGCua-GUGGCA--GUG- -5'
15662 3' -52.9 NC_004065.1 + 199494 0.68 0.975717
Target:  5'- gCGGACGCCGACgaugacgacugacggACGGacgguacaucgccUCGCCaUCACa -3'
miRNA:   3'- gGCCUGUGGUUG---------------UGCU-------------AGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 198043 0.75 0.75835
Target:  5'- gCUGGugACCAACGCGGaCACCGgCGa -3'
miRNA:   3'- -GGCCugUGGUUGUGCUaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 197114 0.69 0.96956
Target:  5'- uUCGGACugCuGCacuGCGAgacgcugUACCGUCGCc -3'
miRNA:   3'- -GGCCUGugGuUG---UGCUa------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 196031 0.67 0.98981
Target:  5'- cUCGGGcCACCAcgugcaugaGCGCGAgcCAUCGUCGg -3'
miRNA:   3'- -GGCCU-GUGGU---------UGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 195378 0.69 0.959956
Target:  5'- cCUGGACACCGugACGGccgaggUCuuccacggcgaGCCGUaCACg -3'
miRNA:   3'- -GGCCUGUGGUugUGCU------AG-----------UGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 194814 0.72 0.882083
Target:  5'- cCUGaACGCCGugGCGGUgGCCGcCACg -3'
miRNA:   3'- -GGCcUGUGGUugUGCUAgUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 194619 0.68 0.972089
Target:  5'- aCCGGcCGCCGAucgccacgucgcuCGCGAgccaggagaUCGCgCGUCGCg -3'
miRNA:   3'- -GGCCuGUGGUU-------------GUGCU---------AGUG-GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 194572 0.66 0.994785
Target:  5'- gCGGGCuccgACCAGCACGAcgguggacaccUCgaagacaaGCCGUCGu -3'
miRNA:   3'- gGCCUG----UGGUUGUGCU-----------AG--------UGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 194439 0.68 0.976687
Target:  5'- cCCGGGCGCCucGgucgaagcgguuggGCACGGcggCGCCGcCGCu -3'
miRNA:   3'- -GGCCUGUGG--U--------------UGUGCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 193663 0.66 0.992527
Target:  5'- gUGGGCaagcGCCAcugGCACGcagguaauugaugCGCCGUCACg -3'
miRNA:   3'- gGCCUG----UGGU---UGUGCua-----------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 193240 0.68 0.972361
Target:  5'- aCUGGGauuuCGCCaAGCGCG-UCACCGUgACc -3'
miRNA:   3'- -GGCCU----GUGG-UUGUGCuAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 192648 0.67 0.985392
Target:  5'- uCUGGuAUcCCGA-GCGAUCACCGUgACg -3'
miRNA:   3'- -GGCC-UGuGGUUgUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 192113 0.71 0.919353
Target:  5'- uCgGGGCGCCAuCGCGGcgauagUCgcgGCCGUCACc -3'
miRNA:   3'- -GgCCUGUGGUuGUGCU------AG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 191579 0.69 0.96956
Target:  5'- gCGGugAUCGgcGCGCGAaaACCGUCGu -3'
miRNA:   3'- gGCCugUGGU--UGUGCUagUGGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.