miRNA display CGI


Results 41 - 60 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 190816 0.69 0.956336
Target:  5'- gUGGugauCugCGACGCGA-CACCGUgCGCg -3'
miRNA:   3'- gGCCu---GugGUUGUGCUaGUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 190484 0.7 0.948444
Target:  5'- -aGGAC-CCGGCGgGccgcucGUCACUGUCACa -3'
miRNA:   3'- ggCCUGuGGUUGUgC------UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 188870 0.73 0.82905
Target:  5'- gCCGc-CGgCGACACGGUCGCCGUgACg -3'
miRNA:   3'- -GGCcuGUgGUUGUGCUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 188580 0.67 0.991023
Target:  5'- -aGGACgcucuccacgGCCAGCACcccGUCucgguCCGUCACg -3'
miRNA:   3'- ggCCUG----------UGGUUGUGc--UAGu----GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 185951 0.68 0.98345
Target:  5'- aCCGGuCACCAGCAUccgugcaGAgaacacCGCCGUCu- -3'
miRNA:   3'- -GGCCuGUGGUUGUG-------CUa-----GUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 182964 0.66 0.99212
Target:  5'- -aGGcGCgACCAGCGuCGGU-ACCGUCGCa -3'
miRNA:   3'- ggCC-UG-UGGUUGU-GCUAgUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 174898 0.7 0.939659
Target:  5'- cUCGGACugUAAUACGAaccuacucCACCGUuCACc -3'
miRNA:   3'- -GGCCUGugGUUGUGCUa-------GUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 174248 0.67 0.987003
Target:  5'- gCCGGAgCuCCuguucguCAUcGUCGCCGUCGCg -3'
miRNA:   3'- -GGCCU-GuGGuu-----GUGcUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 173839 0.67 0.988473
Target:  5'- aUCGGAgACguuucucgaaAACACGGUaagaugaggCGCCGUCACg -3'
miRNA:   3'- -GGCCUgUGg---------UUGUGCUA---------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 169586 0.66 0.993909
Target:  5'- gUCGcGGCuCCGGC-CGGUUcgcggggGCCGUCACg -3'
miRNA:   3'- -GGC-CUGuGGUUGuGCUAG-------UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 168918 0.67 0.991023
Target:  5'- gCGGGCAagaaCGGCaacgagacgACGGUCGCCG-CGCc -3'
miRNA:   3'- gGCCUGUg---GUUG---------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 168822 0.67 0.988473
Target:  5'- gCCGaGACGCC--CGCuGUCGCCGcCGCc -3'
miRNA:   3'- -GGC-CUGUGGuuGUGcUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 164364 0.67 0.988473
Target:  5'- gCaGACGCCccgguCuCGGUUACCGUCGCc -3'
miRNA:   3'- gGcCUGUGGuu---GuGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 163380 0.66 0.993737
Target:  5'- gCCGGGCGCCcacCGCGccgaagccgacgauGUCGCCGagaGCg -3'
miRNA:   3'- -GGCCUGUGGuu-GUGC--------------UAGUGGCag-UG- -5'
15662 3' -52.9 NC_004065.1 + 162379 0.67 0.98981
Target:  5'- uUCGGACACCcGCuCGAcgcCACCGgCAUc -3'
miRNA:   3'- -GGCCUGUGGuUGuGCUa--GUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 162283 0.67 0.988473
Target:  5'- uUCGGGCGgUuGCucgugaacgaGCGGUCGCuCGUCACg -3'
miRNA:   3'- -GGCCUGUgGuUG----------UGCUAGUG-GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 162200 0.72 0.875106
Target:  5'- gCGGuCACuCGACGCGAgCACCGagUCGCu -3'
miRNA:   3'- gGCCuGUG-GUUGUGCUaGUGGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 162188 0.68 0.977395
Target:  5'- aUCGGACgACCGcucgACACGAgcUACCGUUAg -3'
miRNA:   3'- -GGCCUG-UGGU----UGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 161470 0.66 0.993993
Target:  5'- uCCGGGC-CUu-CGgGA-CGCCGUCACc -3'
miRNA:   3'- -GGCCUGuGGuuGUgCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 154172 0.67 0.987003
Target:  5'- gCGGcgGCugUuGCugGcUCGCCGUCGCc -3'
miRNA:   3'- gGCC--UGugGuUGugCuAGUGGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.