miRNA display CGI


Results 61 - 80 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 153954 0.67 0.985392
Target:  5'- gCGGAgcCugCGACuuGucugCGCCGUCGCg -3'
miRNA:   3'- gGCCU--GugGUUGugCua--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 151694 0.71 0.929965
Target:  5'- gCGGGCGCCcuGCAUcGUCugCGUCGg -3'
miRNA:   3'- gGCCUGUGGu-UGUGcUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 151556 0.67 0.985223
Target:  5'- -aGGACACCGACGaccucugcCGcagcaacAUCAUCGUCAUc -3'
miRNA:   3'- ggCCUGUGGUUGU--------GC-------UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 151416 0.79 0.530749
Target:  5'- gCCGGcGCGCCAGCucGCGGUCGCCGacgaucaUCGCg -3'
miRNA:   3'- -GGCC-UGUGGUUG--UGCUAGUGGC-------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 150299 0.72 0.867919
Target:  5'- gUGGACGCCAAgACGucCAUCGUCAa -3'
miRNA:   3'- gGCCUGUGGUUgUGCuaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 149716 0.66 0.993013
Target:  5'- gCGGccGCGCCGGCccucggacucauaGCGGUCcaGCgCGUCGCg -3'
miRNA:   3'- gGCC--UGUGGUUG-------------UGCUAG--UG-GCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 149065 0.66 0.99212
Target:  5'- gCGGcAgGCCGAuCGgGGUCGUCGUCACg -3'
miRNA:   3'- gGCC-UgUGGUU-GUgCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 148963 0.67 0.991023
Target:  5'- uCCGGAC-CaAGCACcgGAUCGCCGUg-- -3'
miRNA:   3'- -GGCCUGuGgUUGUG--CUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 148405 0.67 0.986054
Target:  5'- cCUGGACGCCgAaguacgucucggccaGCAUGGUCGCCugggCGCg -3'
miRNA:   3'- -GGCCUGUGG-U---------------UGUGCUAGUGGca--GUG- -5'
15662 3' -52.9 NC_004065.1 + 148319 0.67 0.98981
Target:  5'- cUCGGcCGCCAGgucgccCACGGugUCGCCGUCc- -3'
miRNA:   3'- -GGCCuGUGGUU------GUGCU--AGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 147444 0.66 0.993993
Target:  5'- nUGGACGCCAACGaguUCugCGggaucCACg -3'
miRNA:   3'- gGCCUGUGGUUGUgcuAGugGCa----GUG- -5'
15662 3' -52.9 NC_004065.1 + 147408 0.73 0.837195
Target:  5'- cCCGGACGCaaccgcguccagCAGCACGA-CGgCGUCAUg -3'
miRNA:   3'- -GGCCUGUG------------GUUGUGCUaGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 147258 0.7 0.948444
Target:  5'- aCCGGACGCCuGCucucCGAg-GCCGUCu- -3'
miRNA:   3'- -GGCCUGUGGuUGu---GCUagUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 146833 0.74 0.785898
Target:  5'- gCCGGGCuCCGGCACGAgcggCACC-UUACc -3'
miRNA:   3'- -GGCCUGuGGUUGUGCUa---GUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 146599 0.66 0.993107
Target:  5'- cCCGGcaACGCCGucgacaccCugGA-CGCCGUCAg -3'
miRNA:   3'- -GGCC--UGUGGUu-------GugCUaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 146545 0.66 0.99549
Target:  5'- gUCGGccuGC-CCGACAUcGUCGgCGUCGCg -3'
miRNA:   3'- -GGCC---UGuGGUUGUGcUAGUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 146287 0.68 0.977161
Target:  5'- gUCGuGGCGCCuucggcgaugaugGACugGAUCGCCGUa-- -3'
miRNA:   3'- -GGC-CUGUGG-------------UUGugCUAGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 146010 0.74 0.794827
Target:  5'- aCCGG-CGCgCGACGCGAUCGgCG-CACu -3'
miRNA:   3'- -GGCCuGUG-GUUGUGCUAGUgGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 145808 0.7 0.9525
Target:  5'- uCUGGuCA-CGACGCGAUCuCCGUCGg -3'
miRNA:   3'- -GGCCuGUgGUUGUGCUAGuGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 144474 0.68 0.979643
Target:  5'- aUGG-CGCCgAACACGAcgugCGCCGUCu- -3'
miRNA:   3'- gGCCuGUGG-UUGUGCUa---GUGGCAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.