miRNA display CGI


Results 81 - 100 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 143961 0.68 0.979643
Target:  5'- gCCGG-CGCCGACcUGGUCuuCGUCGu -3'
miRNA:   3'- -GGCCuGUGGUUGuGCUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 143029 0.69 0.966563
Target:  5'- cCCGGcgccacCACCAGCAgGccGUCGUCGUCGCg -3'
miRNA:   3'- -GGCCu-----GUGGUUGUgC--UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 142911 0.66 0.993993
Target:  5'- cCUGGAcCACC-ACACGccgGCCGUCGa -3'
miRNA:   3'- -GGCCU-GUGGuUGUGCuagUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 142889 0.7 0.948444
Target:  5'- cCUGaGCACCuGCGCGAUCGCgGauUCGCa -3'
miRNA:   3'- -GGCcUGUGGuUGUGCUAGUGgC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 142339 0.72 0.875106
Target:  5'- cUCGaACGCCGGCgGCGAgagCACCGUCAg -3'
miRNA:   3'- -GGCcUGUGGUUG-UGCUa--GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 141281 0.66 0.995749
Target:  5'- aCCGGACACUgcguCGUGGUCuuccagcagaccaagACCGUCAg -3'
miRNA:   3'- -GGCCUGUGGuu--GUGCUAG---------------UGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 140129 0.67 0.985223
Target:  5'- cCCGGAcCACCGuCACGGacccugcUCACUuaauaauaaaaaGUCACa -3'
miRNA:   3'- -GGCCU-GUGGUuGUGCU-------AGUGG------------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 139592 0.73 0.860529
Target:  5'- -aGGugGCCGcgGCGAUCGCCGUUg- -3'
miRNA:   3'- ggCCugUGGUugUGCUAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 139539 0.66 0.994785
Target:  5'- gUCGGACGCCAagACGCGAgcgaguauCCGagaaugCGCg -3'
miRNA:   3'- -GGCCUGUGGU--UGUGCUagu-----GGCa-----GUG- -5'
15662 3' -52.9 NC_004065.1 + 139280 0.68 0.974718
Target:  5'- aCGGACugCAgcgucuucuugACGCGGUCcauggccACCGUCcCg -3'
miRNA:   3'- gGCCUGugGU-----------UGUGCUAG-------UGGCAGuG- -5'
15662 3' -52.9 NC_004065.1 + 138824 0.72 0.867919
Target:  5'- cCCGGAgCGgaCGGCACcGUCGCCGUCAg -3'
miRNA:   3'- -GGCCU-GUg-GUUGUGcUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 138391 0.87 0.221843
Target:  5'- gCCGGcCgcuguagccaugcucACCGACGCGAUCGCCGUCGCg -3'
miRNA:   3'- -GGCCuG---------------UGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 137493 0.68 0.972361
Target:  5'- cCCGuGcCGCCGggGCACGAggaaCACCGUgGCc -3'
miRNA:   3'- -GGC-CuGUGGU--UGUGCUa---GUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 136865 0.69 0.956336
Target:  5'- aCGGAUGCC---GCGGUCAgCGUCAg -3'
miRNA:   3'- gGCCUGUGGuugUGCUAGUgGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 136110 0.66 0.993993
Target:  5'- aUCGGcccaACCGACACGA-CACCcaucgacgagGUCGCc -3'
miRNA:   3'- -GGCCug--UGGUUGUGCUaGUGG----------CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 135720 0.66 0.995287
Target:  5'- gCCGGugACCuccugggcguacgaGAUGCGAauggCGuuGUCGCa -3'
miRNA:   3'- -GGCCugUGG--------------UUGUGCUa---GUggCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 135642 0.77 0.660869
Target:  5'- gUCGGGCgcgGCCGGCGCG-UCACCGUCc- -3'
miRNA:   3'- -GGCCUG---UGGUUGUGCuAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 132360 0.68 0.979643
Target:  5'- gUGGAgGCggUAGCACGggCagGCCGUCGCg -3'
miRNA:   3'- gGCCUgUG--GUUGUGCuaG--UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 132297 0.75 0.776837
Target:  5'- gCCGGGCAUaAACAUGuUCGCCGUCu- -3'
miRNA:   3'- -GGCCUGUGgUUGUGCuAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 132105 0.66 0.993107
Target:  5'- gCCGGACGCgCGGCGguuCGAggugaaCGCCGggucCACg -3'
miRNA:   3'- -GGCCUGUG-GUUGU---GCUa-----GUGGCa---GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.