miRNA display CGI


Results 101 - 120 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 131569 0.66 0.99212
Target:  5'- -gGGACGcCCAGCuucuCGAccaccuugaCGCCGUCGCu -3'
miRNA:   3'- ggCCUGU-GGUUGu---GCUa--------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 131329 0.66 0.99549
Target:  5'- gCUGGGCGuccCCAugACgGGUC-CCGUCGa -3'
miRNA:   3'- -GGCCUGU---GGUugUG-CUAGuGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 130356 0.66 0.993993
Target:  5'- aCCGGACGCUgucGGCGCcg-CGCCGcCGg -3'
miRNA:   3'- -GGCCUGUGG---UUGUGcuaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 130128 0.68 0.972089
Target:  5'- gCCGGcaGCAUCAACggcgagaggaaggACGAg-GCCGUCGCu -3'
miRNA:   3'- -GGCC--UGUGGUUG-------------UGCUagUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 129693 0.68 0.972361
Target:  5'- gCCGGAgACCuuaggUAUGAUgGCgGUCGCg -3'
miRNA:   3'- -GGCCUgUGGuu---GUGCUAgUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 128401 0.68 0.983634
Target:  5'- cCCGGcgagcguaACGCCAGCAUGAccUUACCuGUCuCg -3'
miRNA:   3'- -GGCC--------UGUGGUUGUGCU--AGUGG-CAGuG- -5'
15662 3' -52.9 NC_004065.1 + 126778 0.75 0.776837
Target:  5'- uUGGACACCAuCACcGUCGuCUGUCGCg -3'
miRNA:   3'- gGCCUGUGGUuGUGcUAGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 126153 0.78 0.620785
Target:  5'- gCGaGAagucCGCCAugaucgcgugguGCGCGAUCGCCGUCACg -3'
miRNA:   3'- gGC-CU----GUGGU------------UGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 125124 0.66 0.993993
Target:  5'- gCCGG-CACCAccGCGCcGUCGCCcaGcCGCg -3'
miRNA:   3'- -GGCCuGUGGU--UGUGcUAGUGG--CaGUG- -5'
15662 3' -52.9 NC_004065.1 + 124720 0.76 0.710409
Target:  5'- cCCGGcGCAgCGGCACGGcgCGCCGUCGg -3'
miRNA:   3'- -GGCC-UGUgGUUGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 124568 0.66 0.993107
Target:  5'- cCUGGuuCGCCGuCACGuucUCGuCCGUCGCc -3'
miRNA:   3'- -GGCCu-GUGGUuGUGCu--AGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 124361 0.68 0.98172
Target:  5'- aCCGGugG--AAgGgGAUCACCGUCAg -3'
miRNA:   3'- -GGCCugUggUUgUgCUAGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 124252 0.69 0.959956
Target:  5'- aUGGGCGaCAGCGgGAagcCGCCGUCGCa -3'
miRNA:   3'- gGCCUGUgGUUGUgCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 124212 0.66 0.994785
Target:  5'- aCCGGgACAUCAACACGGUguUC--CACg -3'
miRNA:   3'- -GGCC-UGUGGUUGUGCUAguGGcaGUG- -5'
15662 3' -52.9 NC_004065.1 + 124136 0.68 0.979643
Target:  5'- -gGGACAUCuugugauGCAUGAUCGCCagcGUCAa -3'
miRNA:   3'- ggCCUGUGGu------UGUGCUAGUGG---CAGUg -5'
15662 3' -52.9 NC_004065.1 + 123762 0.67 0.985392
Target:  5'- cUCGGuGCGCCGcGCGcCGGUCGCCuGUCGg -3'
miRNA:   3'- -GGCC-UGUGGU-UGU-GCUAGUGG-CAGUg -5'
15662 3' -52.9 NC_004065.1 + 123644 0.68 0.972361
Target:  5'- gCC-GACACCGGCGucagGAUCACC-UCGCa -3'
miRNA:   3'- -GGcCUGUGGUUGUg---CUAGUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 122480 0.7 0.939659
Target:  5'- cCCGGuaGCGCaCGACccgcagcuggGCGGUCGCCG-CGCg -3'
miRNA:   3'- -GGCC--UGUG-GUUG----------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 121375 0.68 0.98172
Target:  5'- aCGGGCGCCAgcggcacgcagaACACGAUCAgcaccagcugcCCGcCGg -3'
miRNA:   3'- gGCCUGUGGU------------UGUGCUAGU-----------GGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 121190 0.67 0.985392
Target:  5'- cCCGGAC-CCGAC-CGugugcaCGCCG-CACa -3'
miRNA:   3'- -GGCCUGuGGUUGuGCua----GUGGCaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.