miRNA display CGI


Results 81 - 100 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 190816 0.69 0.956336
Target:  5'- gUGGugauCugCGACGCGA-CACCGUgCGCg -3'
miRNA:   3'- gGCCu---GugGUUGUGCUaGUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 42668 0.69 0.959956
Target:  5'- uCgGGACGCUGACGCGAa-GCUGcUCGCg -3'
miRNA:   3'- -GgCCUGUGGUUGUGCUagUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 195378 0.69 0.959956
Target:  5'- cCUGGACACCGugACGGccgaggUCuuccacggcgaGCCGUaCACg -3'
miRNA:   3'- -GGCCUGUGGUugUGCU------AG-----------UGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 103455 0.69 0.959956
Target:  5'- gCGGAC-CCGAgcugauguuCACGAUCugCG-CGCg -3'
miRNA:   3'- gGCCUGuGGUU---------GUGCUAGugGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 124252 0.69 0.959956
Target:  5'- aUGGGCGaCAGCGgGAagcCGCCGUCGCa -3'
miRNA:   3'- gGCCUGUgGUUGUgCUa--GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 223496 0.69 0.963363
Target:  5'- cUCGGG-ACCAGCA-GAUCGCCGgUCAg -3'
miRNA:   3'- -GGCCUgUGGUUGUgCUAGUGGC-AGUg -5'
15662 3' -52.9 NC_004065.1 + 99935 0.69 0.963363
Target:  5'- gCGGGCGCCGA-ACGGcaUCGCCGUa-- -3'
miRNA:   3'- gGCCUGUGGUUgUGCU--AGUGGCAgug -5'
15662 3' -52.9 NC_004065.1 + 122480 0.7 0.939659
Target:  5'- cCCGGuaGCGCaCGACccgcagcuggGCGGUCGCCG-CGCg -3'
miRNA:   3'- -GGCC--UGUG-GUUG----------UGCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 110506 0.7 0.939659
Target:  5'- cCCGGACAaggaugUCGACAgGcUCGCCGcgCACg -3'
miRNA:   3'- -GGCCUGU------GGUUGUgCuAGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 174898 0.7 0.939659
Target:  5'- cUCGGACugUAAUACGAaccuacucCACCGUuCACc -3'
miRNA:   3'- -GGCCUGugGUUGUGCUa-------GUGGCA-GUG- -5'
15662 3' -52.9 NC_004065.1 + 201819 0.71 0.907826
Target:  5'- gCCGGGCGuCCGcaGCuCGAUCACCGagUUGCg -3'
miRNA:   3'- -GGCCUGU-GGU--UGuGCUAGUGGC--AGUG- -5'
15662 3' -52.9 NC_004065.1 + 17663 0.71 0.919353
Target:  5'- gUCGGAUGaCGACcgACGGUCGuCCGUCGCg -3'
miRNA:   3'- -GGCCUGUgGUUG--UGCUAGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 109910 0.71 0.919353
Target:  5'- cCCGGcuCGuCCGcCGCGGcCGCCGUCGCg -3'
miRNA:   3'- -GGCCu-GU-GGUuGUGCUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 206540 0.71 0.919353
Target:  5'- gCGGACGCgAAUcggacucgGCGucGUCAUCGUCGCg -3'
miRNA:   3'- gGCCUGUGgUUG--------UGC--UAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 67643 0.71 0.924774
Target:  5'- cCCGGACAUCGACGCG-UCGgugaUGUCGg -3'
miRNA:   3'- -GGCCUGUGGUUGUGCuAGUg---GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 35144 0.71 0.929965
Target:  5'- gCCGGuguACACC-GCGaucaGAUCGCCGUgACu -3'
miRNA:   3'- -GGCC---UGUGGuUGUg---CUAGUGGCAgUG- -5'
15662 3' -52.9 NC_004065.1 + 115149 0.71 0.929965
Target:  5'- cUCGGAacCGCCGGCcgGCGG-CACCGUCGu -3'
miRNA:   3'- -GGCCU--GUGGUUG--UGCUaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 151694 0.71 0.929965
Target:  5'- gCGGGCGCCcuGCAUcGUCugCGUCGg -3'
miRNA:   3'- gGCCUGUGGu-UGUGcUAGugGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 107952 0.7 0.939659
Target:  5'- gCgGGGCACCugguaGACGCGGUaGCCGUCc- -3'
miRNA:   3'- -GgCCUGUGG-----UUGUGCUAgUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 48060 0.69 0.966563
Target:  5'- aCGGACACCcuGCGCuGAagaaccacuUCACCcUCGCg -3'
miRNA:   3'- gGCCUGUGGu-UGUG-CU---------AGUGGcAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.