miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 116211 0.72 0.888848
Target:  5'- aUGGACGCCGACaACGu--GCCGUCGg -3'
miRNA:   3'- gGCCUGUGGUUG-UGCuagUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 150299 0.72 0.867919
Target:  5'- gUGGACGCCAAgACGucCAUCGUCAa -3'
miRNA:   3'- gGCCUGUGGUUgUGCuaGUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 146833 0.74 0.785898
Target:  5'- gCCGGGCuCCGGCACGAgcggCACC-UUACc -3'
miRNA:   3'- -GGCCUGuGGUUGUGCUa---GUGGcAGUG- -5'
15662 3' -52.9 NC_004065.1 + 22485 0.83 0.371525
Target:  5'- uUGGGCGCCGGCACGAUgACgGUCAUc -3'
miRNA:   3'- gGCCUGUGGUUGUGCUAgUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 34368 0.7 0.943724
Target:  5'- gCGGACucguucuGCCGGCGCuuuAUCGCCGaUCACc -3'
miRNA:   3'- gGCCUG-------UGGUUGUGc--UAGUGGC-AGUG- -5'
15662 3' -52.9 NC_004065.1 + 192113 0.71 0.919353
Target:  5'- uCgGGGCGCCAuCGCGGcgauagUCgcgGCCGUCACc -3'
miRNA:   3'- -GgCCUGUGGUuGUGCU------AG---UGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 60951 0.73 0.837195
Target:  5'- aCGGGCG-CAGCGCcAUCACCGUCuCg -3'
miRNA:   3'- gGCCUGUgGUUGUGcUAGUGGCAGuG- -5'
15662 3' -52.9 NC_004065.1 + 138391 0.87 0.221843
Target:  5'- gCCGGcCgcuguagccaugcucACCGACGCGAUCGCCGUCGCg -3'
miRNA:   3'- -GGCCuG---------------UGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 32278 0.71 0.906019
Target:  5'- aCgGGACACUgcgcgauggccucgGAgGCGGUCGCgGUCGCc -3'
miRNA:   3'- -GgCCUGUGG--------------UUgUGCUAGUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 211811 0.92 0.112052
Target:  5'- aCGGugACCAuCGCGAUCACCGUCGCc -3'
miRNA:   3'- gGCCugUGGUuGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 67245 0.73 0.852941
Target:  5'- aCGGGCGCCGACugG-UCACgGcuugCGCg -3'
miRNA:   3'- gGCCUGUGGUUGugCuAGUGgCa---GUG- -5'
15662 3' -52.9 NC_004065.1 + 22266 0.72 0.888848
Target:  5'- gCCGGGuuagUGCCGGCgGCGAUgACCGUCGg -3'
miRNA:   3'- -GGCCU----GUGGUUG-UGCUAgUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 49963 0.74 0.820734
Target:  5'- gCCGGGCAUCAugGagagGAcCGCCGUCAUc -3'
miRNA:   3'- -GGCCUGUGGUugUg---CUaGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 146010 0.74 0.794827
Target:  5'- aCCGG-CGCgCGACGCGAUCGgCG-CACu -3'
miRNA:   3'- -GGCCuGUG-GUUGUGCUAGUgGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 53941 0.76 0.700595
Target:  5'- gUCGGGCGgCGACACGAUCAUCGg--- -3'
miRNA:   3'- -GGCCUGUgGUUGUGCUAGUGGCagug -5'
15662 3' -52.9 NC_004065.1 + 72011 0.79 0.525917
Target:  5'- --cGACGCCAACACGGUCACCGaccgguagcgccgcgUCACc -3'
miRNA:   3'- ggcCUGUGGUUGUGCUAGUGGC---------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 59887 0.7 0.952105
Target:  5'- gCUGGACcgugucgACCGACGCGGUCAUcaagaugugCGUCGa -3'
miRNA:   3'- -GGCCUG-------UGGUUGUGCUAGUG---------GCAGUg -5'
15662 3' -52.9 NC_004065.1 + 76924 0.7 0.944164
Target:  5'- aCGGcgGCGCCGACGCGAUCcguuucgaGCCGaUGCu -3'
miRNA:   3'- gGCC--UGUGGUUGUGCUAG--------UGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 110671 0.71 0.929965
Target:  5'- -aGGACGCCGGCgGCGGaggagaCGCCGUCGg -3'
miRNA:   3'- ggCCUGUGGUUG-UGCUa-----GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 21028 0.71 0.919353
Target:  5'- uUCGGAgcuguaCGCUAGgGCGAUCGCCaUCACc -3'
miRNA:   3'- -GGCCU------GUGGUUgUGCUAGUGGcAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.